41,216 research outputs found
Bayesian Logic Programs
Bayesian networks provide an elegant formalism for representing and reasoning
about uncertainty using probability theory. Theyare a probabilistic extension
of propositional logic and, hence, inherit some of the limitations of
propositional logic, such as the difficulties to represent objects and
relations. We introduce a generalization of Bayesian networks, called Bayesian
logic programs, to overcome these limitations. In order to represent objects
and relations it combines Bayesian networks with definite clause logic by
establishing a one-to-one mapping between ground atoms and random variables. We
show that Bayesian logic programs combine the advantages of both definite
clause logic and Bayesian networks. This includes the separation of
quantitative and qualitative aspects of the model. Furthermore, Bayesian logic
programs generalize both Bayesian networks as well as logic programs. So, many
ideas developedComment: 52 page
Conjunctive Bayesian networks
Conjunctive Bayesian networks (CBNs) are graphical models that describe the
accumulation of events which are constrained in the order of their occurrence.
A CBN is given by a partial order on a (finite) set of events. CBNs generalize
the oncogenetic tree models of Desper et al. by allowing the occurrence of an
event to depend on more than one predecessor event. The present paper studies
the statistical and algebraic properties of CBNs. We determine the maximum
likelihood parameters and present a combinatorial solution to the model
selection problem. Our method performs well on two datasets where the events
are HIV mutations associated with drug resistance. Concluding with a study of
the algebraic properties of CBNs, we show that CBNs are toric varieties after a
coordinate transformation and that their ideals possess a quadratic Gr\"{o}bner
basis.Comment: Published in at http://dx.doi.org/10.3150/07-BEJ6133 the Bernoulli
(http://isi.cbs.nl/bernoulli/) by the International Statistical
Institute/Bernoulli Society (http://isi.cbs.nl/BS/bshome.htm
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