1,062,788 research outputs found
Conditional Random Fields as Recurrent Neural Networks
Pixel-level labelling tasks, such as semantic segmentation, play a central
role in image understanding. Recent approaches have attempted to harness the
capabilities of deep learning techniques for image recognition to tackle
pixel-level labelling tasks. One central issue in this methodology is the
limited capacity of deep learning techniques to delineate visual objects. To
solve this problem, we introduce a new form of convolutional neural network
that combines the strengths of Convolutional Neural Networks (CNNs) and
Conditional Random Fields (CRFs)-based probabilistic graphical modelling. To
this end, we formulate mean-field approximate inference for the Conditional
Random Fields with Gaussian pairwise potentials as Recurrent Neural Networks.
This network, called CRF-RNN, is then plugged in as a part of a CNN to obtain a
deep network that has desirable properties of both CNNs and CRFs. Importantly,
our system fully integrates CRF modelling with CNNs, making it possible to
train the whole deep network end-to-end with the usual back-propagation
algorithm, avoiding offline post-processing methods for object delineation. We
apply the proposed method to the problem of semantic image segmentation,
obtaining top results on the challenging Pascal VOC 2012 segmentation
benchmark.Comment: This paper is published in IEEE ICCV 201
PYRO-NN: Python Reconstruction Operators in Neural Networks
Purpose: Recently, several attempts were conducted to transfer deep learning
to medical image reconstruction. An increasingly number of publications follow
the concept of embedding the CT reconstruction as a known operator into a
neural network. However, most of the approaches presented lack an efficient CT
reconstruction framework fully integrated into deep learning environments. As a
result, many approaches are forced to use workarounds for mathematically
unambiguously solvable problems. Methods: PYRO-NN is a generalized framework to
embed known operators into the prevalent deep learning framework Tensorflow.
The current status includes state-of-the-art parallel-, fan- and cone-beam
projectors and back-projectors accelerated with CUDA provided as Tensorflow
layers. On top, the framework provides a high level Python API to conduct FBP
and iterative reconstruction experiments with data from real CT systems.
Results: The framework provides all necessary algorithms and tools to design
end-to-end neural network pipelines with integrated CT reconstruction
algorithms. The high level Python API allows a simple use of the layers as
known from Tensorflow. To demonstrate the capabilities of the layers, the
framework comes with three baseline experiments showing a cone-beam short scan
FDK reconstruction, a CT reconstruction filter learning setup, and a TV
regularized iterative reconstruction. All algorithms and tools are referenced
to a scientific publication and are compared to existing non deep learning
reconstruction frameworks. The framework is available as open-source software
at \url{https://github.com/csyben/PYRO-NN}. Conclusions: PYRO-NN comes with the
prevalent deep learning framework Tensorflow and allows to setup end-to-end
trainable neural networks in the medical image reconstruction context. We
believe that the framework will be a step towards reproducible researchComment: V1: Submitted to Medical Physics, 11 pages, 7 figure
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