Using Capsule Neural Network to predict Tuberculosis in lens-free microscopic images

Tuberculosis, caused by a bacteria called Mycobacterium tuberculosis, is one of the most serious public health problems worldwide. This work seeks to facilitate and automate the prediction of tuberculosis by the MODS method and using lens-free microscopy, which is easy to use by untrained personnel. We employ the CapsNet architecture in our collected dataset and show that it has a better accuracy than traditional CNN architectures.Comment: HSYS Workshop at ICML 202

A Convolutional Neural Network for gaze preference detection: A potential tool for diagnostics of autism spectrum disorder in children

Early diagnosis of autism spectrum disorder (ASD) is known to improve the quality of life of affected individuals. However, diagnosis is often delayed even in wealthier countries including the US, largely due to the fact that gold standard diagnostic tools such as the Autism Diagnostic Observation Schedule (ADOS) and the Autism Diagnostic Interview-Revised (ADI-R) are time consuming and require expertise to administer. This trend is even more pronounced lower resources settings due to a lack of trained experts. As a result, alternative, less technical methods that leverage the unique ways in which children with ASD react to visual stimulation in a controlled environment have been developed to help facilitate early diagnosis. Previous studies have shown that, when exposed to a video that presents both social and abstract scenes side by side, a child with ASD will focus their attention towards the abstract images on the screen to a greater extent than a child without ASD. Such differential responses make it possible to implement an algorithm for the rapid diagnosis of ASD based on eye tracking against different visual stimuli. Here we propose a convolutional neural network (CNN) algorithm for gaze prediction using images extracted from a one-minute stimulus video. Our model achieved a high accuracy rate and robustness for prediction of gaze direction with independent persons and employing a different camera than the one used during testing. In addition to this, the proposed algorithm achieves a fast response time, providing a near real-time evaluation of ASD. Thereby, by applying the proposed method, we could significantly reduce the diagnosis time and facilitate the diagnosis of ASD in low resource regions.Comment: Pre-printed version for submission in a journa

Radiologist-Level COVID-19 Detection Using CT Scans with Detail-Oriented Capsule Networks

Radiographic images offer an alternative method for the rapid screening and monitoring of Coronavirus Disease 2019 (COVID-19) patients. This approach is limited by the shortage of radiology experts who can provide a timely interpretation of these images. Motivated by this challenge, our paper proposes a novel learning architecture, called Detail-Oriented Capsule Networks (DECAPS), for the automatic diagnosis of COVID-19 from Computed Tomography (CT) scans. Our network combines the strength of Capsule Networks with several architecture improvements meant to boost classification accuracies. First, DECAPS uses an Inverted Dynamic Routing mechanism which increases model stability by preventing the passage of information from non-descriptive regions. Second, DECAPS employs a Peekaboo training procedure which uses a two-stage patch crop and drop strategy to encourage the network to generate activation maps for every target concept. The network then uses the activation maps to focus on regions of interest and combines both coarse and fine-grained representations of the data. Finally, we use a data augmentation method based on conditional generative adversarial networks to deal with the issue of data scarcity. Our model achieves 84.3% precision, 91.5% recall, and 96.1% area under the ROC curve, significantly outperforming state-of-the-art methods. We compare the performance of the DECAPS model with three experienced, well-trained thoracic radiologists and show that the architecture significantly outperforms them. While further studies on larger datasets are required to confirm this finding, our results imply that architectures like DECAPS can be used to assist radiologists in the CT scan mediated diagnosis of COVID-19