23,894 research outputs found
FastVentricle: Cardiac Segmentation with ENet
Cardiac Magnetic Resonance (CMR) imaging is commonly used to assess cardiac
structure and function. One disadvantage of CMR is that post-processing of
exams is tedious. Without automation, precise assessment of cardiac function
via CMR typically requires an annotator to spend tens of minutes per case
manually contouring ventricular structures. Automatic contouring can lower the
required time per patient by generating contour suggestions that can be lightly
modified by the annotator. Fully convolutional networks (FCNs), a variant of
convolutional neural networks, have been used to rapidly advance the
state-of-the-art in automated segmentation, which makes FCNs a natural choice
for ventricular segmentation. However, FCNs are limited by their computational
cost, which increases the monetary cost and degrades the user experience of
production systems. To combat this shortcoming, we have developed the
FastVentricle architecture, an FCN architecture for ventricular segmentation
based on the recently developed ENet architecture. FastVentricle is 4x faster
and runs with 6x less memory than the previous state-of-the-art ventricular
segmentation architecture while still maintaining excellent clinical accuracy.Comment: 11 pages, 6 figures, Accepted to Functional Imaging and Modeling of
the Heart (FIMH) 201
Neonatal Seizure Detection using Convolutional Neural Networks
This study presents a novel end-to-end architecture that learns hierarchical
representations from raw EEG data using fully convolutional deep neural
networks for the task of neonatal seizure detection. The deep neural network
acts as both feature extractor and classifier, allowing for end-to-end
optimization of the seizure detector. The designed system is evaluated on a
large dataset of continuous unedited multi-channel neonatal EEG totaling 835
hours and comprising of 1389 seizures. The proposed deep architecture, with
sample-level filters, achieves an accuracy that is comparable to the
state-of-the-art SVM-based neonatal seizure detector, which operates on a set
of carefully designed hand-crafted features. The fully convolutional
architecture allows for the localization of EEG waveforms and patterns that
result in high seizure probabilities for further clinical examination.Comment: IEEE International Workshop on Machine Learning for Signal Processin
Automated segmentation on the entire cardiac cycle using a deep learning work-flow
The segmentation of the left ventricle (LV) from CINE MRI images is essential
to infer important clinical parameters. Typically, machine learning algorithms
for automated LV segmentation use annotated contours from only two cardiac
phases, diastole, and systole. In this work, we present an analysis work-flow
for fully-automated LV segmentation that learns from images acquired through
the cardiac cycle. The workflow consists of three components: first, for each
image in the sequence, we perform an automated localization and subsequent
cropping of the bounding box containing the cardiac silhouette. Second, we
identify the LV contours using a Temporal Fully Convolutional Neural Network
(T-FCNN), which extends Fully Convolutional Neural Networks (FCNN) through a
recurrent mechanism enforcing temporal coherence across consecutive frames.
Finally, we further defined the boundaries using either one of two components:
fully-connected Conditional Random Fields (CRFs) with Gaussian edge potentials
and Semantic Flow. Our initial experiments suggest that significant improvement
in performance can potentially be achieved by using a recurrent neural network
component that explicitly learns cardiac motion patterns whilst performing LV
segmentation.Comment: 6 pages, 2 figures, published on IEEE Xplor
Modeling the Intra-class Variability for Liver Lesion Detection using a Multi-class Patch-based CNN
Automatic detection of liver lesions in CT images poses a great challenge for
researchers. In this work we present a deep learning approach that models
explicitly the variability within the non-lesion class, based on prior
knowledge of the data, to support an automated lesion detection system. A
multi-class convolutional neural network (CNN) is proposed to categorize input
image patches into sub-categories of boundary and interior patches, the
decisions of which are fused to reach a binary lesion vs non-lesion decision.
For validation of our system, we use CT images of 132 livers and 498 lesions.
Our approach shows highly improved detection results that outperform the
state-of-the-art fully convolutional network. Automated computerized tools, as
shown in this work, have the potential in the future to support the
radiologists towards improved detection.Comment: To be presented at PatchMI: 3rd International Workshop on Patch-based
Techniques in Medical Imaging, MICCAI 201
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