23,568 research outputs found
Spinal cord gray matter segmentation using deep dilated convolutions
Gray matter (GM) tissue changes have been associated with a wide range of
neurological disorders and was also recently found relevant as a biomarker for
disability in amyotrophic lateral sclerosis. The ability to automatically
segment the GM is, therefore, an important task for modern studies of the
spinal cord. In this work, we devise a modern, simple and end-to-end fully
automated human spinal cord gray matter segmentation method using Deep
Learning, that works both on in vivo and ex vivo MRI acquisitions. We evaluate
our method against six independently developed methods on a GM segmentation
challenge and report state-of-the-art results in 8 out of 10 different
evaluation metrics as well as major network parameter reduction when compared
to the traditional medical imaging architectures such as U-Nets.Comment: 13 pages, 8 figure
Practical recommendations for gradient-based training of deep architectures
Learning algorithms related to artificial neural networks and in particular
for Deep Learning may seem to involve many bells and whistles, called
hyper-parameters. This chapter is meant as a practical guide with
recommendations for some of the most commonly used hyper-parameters, in
particular in the context of learning algorithms based on back-propagated
gradient and gradient-based optimization. It also discusses how to deal with
the fact that more interesting results can be obtained when allowing one to
adjust many hyper-parameters. Overall, it describes elements of the practice
used to successfully and efficiently train and debug large-scale and often deep
multi-layer neural networks. It closes with open questions about the training
difficulties observed with deeper architectures
TensorFlow Doing HPC
TensorFlow is a popular emerging open-source programming framework supporting
the execution of distributed applications on heterogeneous hardware. While
TensorFlow has been initially designed for developing Machine Learning (ML)
applications, in fact TensorFlow aims at supporting the development of a much
broader range of application kinds that are outside the ML domain and can
possibly include HPC applications. However, very few experiments have been
conducted to evaluate TensorFlow performance when running HPC workloads on
supercomputers. This work addresses this lack by designing four traditional HPC
benchmark applications: STREAM, matrix-matrix multiply, Conjugate Gradient (CG)
solver and Fast Fourier Transform (FFT). We analyze their performance on two
supercomputers with accelerators and evaluate the potential of TensorFlow for
developing HPC applications. Our tests show that TensorFlow can fully take
advantage of high performance networks and accelerators on supercomputers.
Running our TensorFlow STREAM benchmark, we obtain over 50% of theoretical
communication bandwidth on our testing platform. We find an approximately 2x,
1.7x and 1.8x performance improvement when increasing the number of GPUs from
two to four in the matrix-matrix multiply, CG and FFT applications
respectively. All our performance results demonstrate that TensorFlow has high
potential of emerging also as HPC programming framework for heterogeneous
supercomputers.Comment: Accepted for publication at The Ninth International Workshop on
Accelerators and Hybrid Exascale Systems (AsHES'19
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