Efficient Lock-free Binary Search Trees

In this paper we present a novel algorithm for concurrent lock-free internal binary search trees (BST) and implement a Set abstract data type (ADT) based on that. We show that in the presented lock-free BST algorithm the amortized step complexity of each set operation - {\sc Add}, {\sc Remove} and {\sc Contains} - is $O(H(n) + c)$, where, $H(n)$ is the height of BST with $n$ number of nodes and $c$ is the contention during the execution. Our algorithm adapts to contention measures according to read-write load. If the situation is read-heavy, the operations avoid helping pending concurrent {\sc Remove} operations during traversal, and, adapt to interval contention. However, for write-heavy situations we let an operation help pending {\sc Remove}, even though it is not obstructed, and so adapt to tighter point contention. It uses single-word compare-and-swap (\texttt{CAS}) operations. We show that our algorithm has improved disjoint-access-parallelism compared to similar existing algorithms. We prove that the presented algorithm is linearizable. To the best of our knowledge this is the first algorithm for any concurrent tree data structure in which the modify operations are performed with an additive term of contention measure.Comment: 15 pages, 3 figures, submitted to POD

A GPU-accelerated Branch-and-Bound Algorithm for the Flow-Shop Scheduling Problem

Branch-and-Bound (B&B) algorithms are time intensive tree-based exploration methods for solving to optimality combinatorial optimization problems. In this paper, we investigate the use of GPU computing as a major complementary way to speed up those methods. The focus is put on the bounding mechanism of B&B algorithms, which is the most time consuming part of their exploration process. We propose a parallel B&B algorithm based on a GPU-accelerated bounding model. The proposed approach concentrate on optimizing data access management to further improve the performance of the bounding mechanism which uses large and intermediate data sets that do not completely fit in GPU memory. Extensive experiments of the contribution have been carried out on well known FSP benchmarks using an Nvidia Tesla C2050 GPU card. We compared the obtained performances to a single and a multithreaded CPU-based execution. Accelerations up to x100 are achieved for large problem instances

Main Memory Adaptive Indexing for Multi-core Systems

Adaptive indexing is a concept that considers index creation in databases as a by-product of query processing; as opposed to traditional full index creation where the indexing effort is performed up front before answering any queries. Adaptive indexing has received a considerable amount of attention, and several algorithms have been proposed over the past few years; including a recent experimental study comparing a large number of existing methods. Until now, however, most adaptive indexing algorithms have been designed single-threaded, yet with multi-core systems already well established, the idea of designing parallel algorithms for adaptive indexing is very natural. In this regard only one parallel algorithm for adaptive indexing has recently appeared in the literature: The parallel version of standard cracking. In this paper we describe three alternative parallel algorithms for adaptive indexing, including a second variant of a parallel standard cracking algorithm. Additionally, we describe a hybrid parallel sorting algorithm, and a NUMA-aware method based on sorting. We then thoroughly compare all these algorithms experimentally; along a variant of a recently published parallel version of radix sort. Parallel sorting algorithms serve as a realistic baseline for multi-threaded adaptive indexing techniques. In total we experimentally compare seven parallel algorithms. Additionally, we extensively profile all considered algorithms. The initial set of experiments considered in this paper indicates that our parallel algorithms significantly improve over previously known ones. Our results suggest that, although adaptive indexing algorithms are a good design choice in single-threaded environments, the rules change considerably in the parallel case. That is, in future highly-parallel environments, sorting algorithms could be serious alternatives to adaptive indexing.Comment: 26 pages, 7 figure

GraphMatch: Efficient Large-Scale Graph Construction for Structure from Motion

We present GraphMatch, an approximate yet efficient method for building the matching graph for large-scale structure-from-motion (SfM) pipelines. Unlike modern SfM pipelines that use vocabulary (Voc.) trees to quickly build the matching graph and avoid a costly brute-force search of matching image pairs, GraphMatch does not require an expensive offline pre-processing phase to construct a Voc. tree. Instead, GraphMatch leverages two priors that can predict which image pairs are likely to match, thereby making the matching process for SfM much more efficient. The first is a score computed from the distance between the Fisher vectors of any two images. The second prior is based on the graph distance between vertices in the underlying matching graph. GraphMatch combines these two priors into an iterative "sample-and-propagate" scheme similar to the PatchMatch algorithm. Its sampling stage uses Fisher similarity priors to guide the search for matching image pairs, while its propagation stage explores neighbors of matched pairs to find new ones with a high image similarity score. Our experiments show that GraphMatch finds the most image pairs as compared to competing, approximate methods while at the same time being the most efficient.Comment: Published at IEEE 3DV 201

Parallel Implementation of Efficient Search Schemes for the Inference of Cancer Progression Models

The emergence and development of cancer is a consequence of the accumulation over time of genomic mutations involving a specific set of genes, which provides the cancer clones with a functional selective advantage. In this work, we model the order of accumulation of such mutations during the progression, which eventually leads to the disease, by means of probabilistic graphic models, i.e., Bayesian Networks (BNs). We investigate how to perform the task of learning the structure of such BNs, according to experimental evidence, adopting a global optimization meta-heuristics. In particular, in this work we rely on Genetic Algorithms, and to strongly reduce the execution time of the inference -- which can also involve multiple repetitions to collect statistically significant assessments of the data -- we distribute the calculations using both multi-threading and a multi-node architecture. The results show that our approach is characterized by good accuracy and specificity; we also demonstrate its feasibility, thanks to a 84x reduction of the overall execution time with respect to a traditional sequential implementation