Learning Rigid Image Registration - Utilizing Convolutional Neural Networks for Medical Image Registration

Many traditional computer vision tasks, such as segmentation, have seen large step-changes in accuracy and/or speed with the application of Convolutional Neural Networks (CNNs). Image registration, the alignment of two or more images to a common space, is a fundamental step in many medical imaging workflows. In this paper we investigate whether these techniques can also bring tangible benefits to the registration task. We describe and evaluate the use of convolutional neural networks (CNNs) for both mono- and multi- modality registration and compare their performance to more traditional schemes, namely multi-scale, iterative registration. This paper also investigates incorporating inverse consistency of the learned spatial transformations to impose additional constraints on the network during training and investigate any benefit in accuracy during detection. The approaches are validated with a series of artificial mono-modal registration tasks utilizing T1-weighted MR brain i mages from the Open Access Series of Imaging Studies (OASIS) study and IXI brain development dataset and a series of real multi-modality registration tasks using T1-weighted and T2-weighted MR brain images from the 2015 Ischemia Stroke Lesion segmentation (ISLES) challenge. The results demonstrate that CNNs give excellent performance for both mono- and multi- modality head and neck registration compared to the baseline method with significantly fewer outliers and lower mean errors

Cycle-Consistent Deep Generative Hashing for Cross-Modal Retrieval

In this paper, we propose a novel deep generative approach to cross-modal retrieval to learn hash functions in the absence of paired training samples through the cycle consistency loss. Our proposed approach employs adversarial training scheme to lean a couple of hash functions enabling translation between modalities while assuming the underlying semantic relationship. To induce the hash codes with semantics to the input-output pair, cycle consistency loss is further proposed upon the adversarial training to strengthen the correlations between inputs and corresponding outputs. Our approach is generative to learn hash functions such that the learned hash codes can maximally correlate each input-output correspondence, meanwhile can also regenerate the inputs so as to minimize the information loss. The learning to hash embedding is thus performed to jointly optimize the parameters of the hash functions across modalities as well as the associated generative models. Extensive experiments on a variety of large-scale cross-modal data sets demonstrate that our proposed method achieves better retrieval results than the state-of-the-arts.Comment: To appeared on IEEE Trans. Image Processing. arXiv admin note: text overlap with arXiv:1703.10593 by other author

Does Multimodality Help Human and Machine for Translation and Image Captioning?

This paper presents the systems developed by LIUM and CVC for the WMT16 Multimodal Machine Translation challenge. We explored various comparative methods, namely phrase-based systems and attentional recurrent neural networks models trained using monomodal or multimodal data. We also performed a human evaluation in order to estimate the usefulness of multimodal data for human machine translation and image description generation. Our systems obtained the best results for both tasks according to the automatic evaluation metrics BLEU and METEOR.Comment: 7 pages, 2 figures, v4: Small clarification in section 4 title and conten

Multi-modal gated recurrent units for image description

Using a natural language sentence to describe the content of an image is a challenging but very important task. It is challenging because a description must not only capture objects contained in the image and the relationships among them, but also be relevant and grammatically correct. In this paper a multi-modal embedding model based on gated recurrent units (GRU) which can generate variable-length description for a given image. In the training step, we apply the convolutional neural network (CNN) to extract the image feature. Then the feature is imported into the multi-modal GRU as well as the corresponding sentence representations. The multi-modal GRU learns the inter-modal relations between image and sentence. And in the testing step, when an image is imported to our multi-modal GRU model, a sentence which describes the image content is generated. The experimental results demonstrate that our multi-modal GRU model obtains the state-of-the-art performance on Flickr8K, Flickr30K and MS COCO datasets.Comment: 25 pages, 7 figures, 6 tables, magazin

Joint Intermodal and Intramodal Label Transfers for Extremely Rare or Unseen Classes

In this paper, we present a label transfer model from texts to images for image classification tasks. The problem of image classification is often much more challenging than text classification. On one hand, labeled text data is more widely available than the labeled images for classification tasks. On the other hand, text data tends to have natural semantic interpretability, and they are often more directly related to class labels. On the contrary, the image features are not directly related to concepts inherent in class labels. One of our goals in this paper is to develop a model for revealing the functional relationships between text and image features as to directly transfer intermodal and intramodal labels to annotate the images. This is implemented by learning a transfer function as a bridge to propagate the labels between two multimodal spaces. However, the intermodal label transfers could be undermined by blindly transferring the labels of noisy texts to annotate images. To mitigate this problem, we present an intramodal label transfer process, which complements the intermodal label transfer by transferring the image labels instead when relevant text is absent from the source corpus. In addition, we generalize the inter-modal label transfer to zero-shot learning scenario where there are only text examples available to label unseen classes of images without any positive image examples. We evaluate our algorithm on an image classification task and show the effectiveness with respect to the other compared algorithms.Comment: The paper has been accepted by IEEE Transactions on Pattern Analysis and Machine Intelligence. It will apear in a future issu

Bridge Correlational Neural Networks for Multilingual Multimodal Representation Learning

Recently there has been a lot of interest in learning common representations for multiple views of data. Typically, such common representations are learned using a parallel corpus between the two views (say, 1M images and their English captions). In this work, we address a real-world scenario where no direct parallel data is available between two views of interest (say, $V_1$ and $V_2$) but parallel data is available between each of these views and a pivot view ($V_3$). We propose a model for learning a common representation for $V_1$, $V_2$ and $V_3$ using only the parallel data available between $V_1V_3$ and $V_2V_3$. The proposed model is generic and even works when there are $n$ views of interest and only one pivot view which acts as a bridge between them. There are two specific downstream applications that we focus on (i) transfer learning between languages $L_1$,$L_2$,...,$L_n$ using a pivot language $L$ and (ii) cross modal access between images and a language $L_1$ using a pivot language $L_2$. Our model achieves state-of-the-art performance in multilingual document classification on the publicly available multilingual TED corpus and promising results in multilingual multimodal retrieval on a new dataset created and released as a part of this work.Comment: Published at NAACL-HLT 201

Recent Advances in Transfer Learning for Cross-Dataset Visual Recognition: A Problem-Oriented Perspective

This paper takes a problem-oriented perspective and presents a comprehensive review of transfer learning methods, both shallow and deep, for cross-dataset visual recognition. Specifically, it categorises the cross-dataset recognition into seventeen problems based on a set of carefully chosen data and label attributes. Such a problem-oriented taxonomy has allowed us to examine how different transfer learning approaches tackle each problem and how well each problem has been researched to date. The comprehensive problem-oriented review of the advances in transfer learning with respect to the problem has not only revealed the challenges in transfer learning for visual recognition, but also the problems (e.g. eight of the seventeen problems) that have been scarcely studied. This survey not only presents an up-to-date technical review for researchers, but also a systematic approach and a reference for a machine learning practitioner to categorise a real problem and to look up for a possible solution accordingly

VIGAN: Missing View Imputation with Generative Adversarial Networks

In an era when big data are becoming the norm, there is less concern with the quantity but more with the quality and completeness of the data. In many disciplines, data are collected from heterogeneous sources, resulting in multi-view or multi-modal datasets. The missing data problem has been challenging to address in multi-view data analysis. Especially, when certain samples miss an entire view of data, it creates the missing view problem. Classic multiple imputations or matrix completion methods are hardly effective here when no information can be based on in the specific view to impute data for such samples. The commonly-used simple method of removing samples with a missing view can dramatically reduce sample size, thus diminishing the statistical power of a subsequent analysis. In this paper, we propose a novel approach for view imputation via generative adversarial networks (GANs), which we name by VIGAN. This approach first treats each view as a separate domain and identifies domain-to-domain mappings via a GAN using randomly-sampled data from each view, and then employs a multi-modal denoising autoencoder (DAE) to reconstruct the missing view from the GAN outputs based on paired data across the views. Then, by optimizing the GAN and DAE jointly, our model enables the knowledge integration for domain mappings and view correspondences to effectively recover the missing view. Empirical results on benchmark datasets validate the VIGAN approach by comparing against the state of the art. The evaluation of VIGAN in a genetic study of substance use disorders further proves the effectiveness and usability of this approach in life science.Comment: 10 pages, 8 figures, conferenc