The Faculty Notebook, September 2002

The Faculty Notebook is published periodically by the Office of the Provost at Gettysburg College to bring to the attention of the campus community accomplishments and activities of academic interest. Faculty are encouraged to submit materials for consideration for publication to the Associate Provost for Faculty Development. Copies of this publication are available at the Office of the Provost

A scalable parallel finite element framework for growing geometries. Application to metal additive manufacturing

This work introduces an innovative parallel, fully-distributed finite element framework for growing geometries and its application to metal additive manufacturing. It is well-known that virtual part design and qualification in additive manufacturing requires highly-accurate multiscale and multiphysics analyses. Only high performance computing tools are able to handle such complexity in time frames compatible with time-to-market. However, efficiency, without loss of accuracy, has rarely held the centre stage in the numerical community. Here, in contrast, the framework is designed to adequately exploit the resources of high-end distributed-memory machines. It is grounded on three building blocks: (1) Hierarchical adaptive mesh refinement with octree-based meshes; (2) a parallel strategy to model the growth of the geometry; (3) state-of-the-art parallel iterative linear solvers. Computational experiments consider the heat transfer analysis at the part scale of the printing process by powder-bed technologies. After verification against a 3D benchmark, a strong-scaling analysis assesses performance and identifies major sources of parallel overhead. A third numerical example examines the efficiency and robustness of (2) in a curved 3D shape. Unprecedented parallelism and scalability were achieved in this work. Hence, this framework contributes to take on higher complexity and/or accuracy, not only of part-scale simulations of metal or polymer additive manufacturing, but also in welding, sedimentation, atherosclerosis, or any other physical problem where the physical domain of interest grows in time

Dynamical Optimal Transport on Discrete Surfaces

We propose a technique for interpolating between probability distributions on discrete surfaces, based on the theory of optimal transport. Unlike previous attempts that use linear programming, our method is based on a dynamical formulation of quadratic optimal transport proposed for flat domains by Benamou and Brenier [2000], adapted to discrete surfaces. Our structure-preserving construction yields a Riemannian metric on the (finite-dimensional) space of probability distributions on a discrete surface, which translates the so-called Otto calculus to discrete language. From a practical perspective, our technique provides a smooth interpolation between distributions on discrete surfaces with less diffusion than state-of-the-art algorithms involving entropic regularization. Beyond interpolation, we show how our discrete notion of optimal transport extends to other tasks, such as distribution-valued Dirichlet problems and time integration of gradient flows

Higher-Order DGFEM Transport Calculations on Polytope Meshes for Massively-Parallel Architectures

In this dissertation, we develop improvements to the discrete ordinates (S_N) neutron transport equation using a Discontinuous Galerkin Finite Element Method (DGFEM) spatial discretization on arbitrary polytope (polygonal and polyhedral) grids compatible for massively-parallel computer architectures. Polytope meshes are attractive for multiple reasons, including their use in other physics communities and their ease in handling local mesh refinement strategies. In this work, we focus on two topical areas of research. First, we discuss higher-order basis functions compatible to solve the DGFEM S_N transport equation on arbitrary polygonal meshes. Second, we assess Diffusion Synthetic Acceleration (DSA) schemes compatible with polytope grids for massively-parallel transport problems. We first utilize basis functions compatible with arbitrary polygonal grids for the DGFEM transport equation. We analyze four different basis functions that have linear completeness on polygons: the Wachspress rational functions, the PWL functions, the mean value coordinates, and the maximum entropy coordinates. We then describe the procedure to extend these polygonal linear basis functions into the quadratic serendipity space of functions. These quadratic basis functions can exactly interpolate monomial functions up to order 2. Both the linear and quadratic sets of basis functions preserve transport solutions in the thick diffusion limit. Maximum convergence rates of 2 and 3 are observed for regular transport solutions for the linear and quadratic basis functions, respectively. For problems that are limited by the regularity of the transport solution, convergence rates of 3/2 (when the solution is continuous) and 1/2 (when the solution is discontinuous) are observed. Spatial Adaptive Mesh Refinement (AMR) achieved superior convergence rates than uniform refinement, even for problems bounded by the solution regularity. We demonstrated accuracy in the AMR solutions by allowing them to reach a level where the ray effects of the angular discretization are realized. Next, we analyzed DSA schemes to accelerate both the within-group iterations as well as the thermal upscattering iterations for multigroup transport problems. Accelerating the thermal upscattering iterations is important for materials (e.g., graphite) with significant thermal energy scattering and minimal absorption. All of the acceleration schemes analyzed use a DGFEM discretization of the diffusion equation that is compatible with arbitrary polytope meshes: the Modified Interior Penalty Method (MIP). MIP uses the same DGFEM discretization as the transport equation. The MIP form is Symmetric Positive De_nite (SPD) and e_ciently solved with Preconditioned Conjugate Gradient (PCG) with Algebraic MultiGrid (AMG) preconditioning. The analysis from previous work was extended to show MIP's stability and robustness for accelerating 3D transport problems. MIP DSA preconditioning was implemented in the Parallel Deterministic Transport (PDT) code at Texas A&M University and linked with the HYPRE suite of linear solvers. Good scalability was numerically verified out to around 131K processors. The fraction of time spent performing DSA operations was small for problems with sufficient work performed in the transport sweep (O(10^3) angular directions). Finally, we have developed a novel methodology to accelerate transport problems dominated by thermal neutron upscattering. Compared to historical upscatter acceleration methods, our method is parallelizable and amenable to massively parallel transport calculations. Speedup factors of about 3-4 were observed with our new method

Improving the scalability of parallel N-body applications with an event driven constraint based execution model

The scalability and efficiency of graph applications are significantly constrained by conventional systems and their supporting programming models. Technology trends like multicore, manycore, and heterogeneous system architectures are introducing further challenges and possibilities for emerging application domains such as graph applications. This paper explores the space of effective parallel execution of ephemeral graphs that are dynamically generated using the Barnes-Hut algorithm to exemplify dynamic workloads. The workloads are expressed using the semantics of an Exascale computing execution model called ParalleX. For comparison, results using conventional execution model semantics are also presented. We find improved load balancing during runtime and automatic parallelism discovery improving efficiency using the advanced semantics for Exascale computing.Comment: 11 figure