Medical imaging analysis with artificial neural networks

Given that neural networks have been widely reported in the research community of medical imaging, we provide a focused literature survey on recent neural network developments in computer-aided diagnosis, medical image segmentation and edge detection towards visual content analysis, and medical image registration for its pre-processing and post-processing, with the aims of increasing awareness of how neural networks can be applied to these areas and to provide a foundation for further research and practical development. Representative techniques and algorithms are explained in detail to provide inspiring examples illustrating: (i) how a known neural network with fixed structure and training procedure could be applied to resolve a medical imaging problem; (ii) how medical images could be analysed, processed, and characterised by neural networks; and (iii) how neural networks could be expanded further to resolve problems relevant to medical imaging. In the concluding section, a highlight of comparisons among many neural network applications is included to provide a global view on computational intelligence with neural networks in medical imaging

Robust sound event detection in bioacoustic sensor networks

Bioacoustic sensors, sometimes known as autonomous recording units (ARUs), can record sounds of wildlife over long periods of time in scalable and minimally invasive ways. Deriving per-species abundance estimates from these sensors requires detection, classification, and quantification of animal vocalizations as individual acoustic events. Yet, variability in ambient noise, both over time and across sensors, hinders the reliability of current automated systems for sound event detection (SED), such as convolutional neural networks (CNN) in the time-frequency domain. In this article, we develop, benchmark, and combine several machine listening techniques to improve the generalizability of SED models across heterogeneous acoustic environments. As a case study, we consider the problem of detecting avian flight calls from a ten-hour recording of nocturnal bird migration, recorded by a network of six ARUs in the presence of heterogeneous background noise. Starting from a CNN yielding state-of-the-art accuracy on this task, we introduce two noise adaptation techniques, respectively integrating short-term (60 milliseconds) and long-term (30 minutes) context. First, we apply per-channel energy normalization (PCEN) in the time-frequency domain, which applies short-term automatic gain control to every subband in the mel-frequency spectrogram. Secondly, we replace the last dense layer in the network by a context-adaptive neural network (CA-NN) layer. Combining them yields state-of-the-art results that are unmatched by artificial data augmentation alone. We release a pre-trained version of our best performing system under the name of BirdVoxDetect, a ready-to-use detector of avian flight calls in field recordings.Comment: 32 pages, in English. Submitted to PLOS ONE journal in February 2019; revised August 2019; published October 201

A frequency-selective feedback model of auditory efferent suppression and its implications for the recognition of speech in noise

The potential contribution of the peripheral auditory efferent system to our understanding of speech in a background of competing noise was studied using a computer model of the auditory periphery and assessed using an automatic speech recognition system. A previous study had shown that a fixed efferent attenuation applied to all channels of a multi-channel model could improve the recognition of connected digit triplets in noise [G. J. Brown, R. T. Ferry, and R. Meddis, J. Acoust. Soc. Am. 127, 943?954 (2010)]. In the current study an anatomically justified feedback loop was used to automatically regulate separate attenuation values for each auditory channel. This arrangement resulted in a further enhancement of speech recognition over fixed-attenuation conditions. Comparisons between multi-talker babble and pink noise interference conditions suggest that the benefit originates from the model?s ability to modify the amount of suppression in each channel separately according to the spectral shape of the interfering sounds

Linear MMSE-Optimal Turbo Equalization Using Context Trees

Formulations of the turbo equalization approach to iterative equalization and decoding vary greatly when channel knowledge is either partially or completely unknown. Maximum aposteriori probability (MAP) and minimum mean square error (MMSE) approaches leverage channel knowledge to make explicit use of soft information (priors over the transmitted data bits) in a manner that is distinctly nonlinear, appearing either in a trellis formulation (MAP) or inside an inverted matrix (MMSE). To date, nearly all adaptive turbo equalization methods either estimate the channel or use a direct adaptation equalizer in which estimates of the transmitted data are formed from an expressly linear function of the received data and soft information, with this latter formulation being most common. We study a class of direct adaptation turbo equalizers that are both adaptive and nonlinear functions of the soft information from the decoder. We introduce piecewise linear models based on context trees that can adaptively approximate the nonlinear dependence of the equalizer on the soft information such that it can choose both the partition regions as well as the locally linear equalizer coefficients in each region independently, with computational complexity that remains of the order of a traditional direct adaptive linear equalizer. This approach is guaranteed to asymptotically achieve the performance of the best piecewise linear equalizer and we quantify the MSE performance of the resulting algorithm and the convergence of its MSE to that of the linear minimum MSE estimator as the depth of the context tree and the data length increase.Comment: Submitted to the IEEE Transactions on Signal Processin

Exploration of audiovisual heritage using audio indexing technology

This paper discusses audio indexing tools that have been implemented for the disclosure of Dutch audiovisual cultural heritage collections. It explains the role of language models and their adaptation to historical settings and the adaptation of acoustic models for homogeneous audio collections. In addition to the benefits of cross-media linking, the requirements for successful tuning and improvement of available tools for indexing the heterogeneous A/V collections from the cultural heritage domain are reviewed. And finally the paper argues that research is needed to cope with the varying information needs for different types of users