Efficient Two-Stage Group Testing Algorithms for Genetic Screening

Efficient two-stage group testing algorithms that are particularly suited for rapid and less-expensive DNA library screening and other large scale biological group testing efforts are investigated in this paper. The main focus is on novel combinatorial constructions in order to minimize the number of individual tests at the second stage of a two-stage disjunctive testing procedure. Building on recent work by Levenshtein (2003) and Tonchev (2008), several new infinite classes of such combinatorial designs are presented.Comment: 14 pages; to appear in "Algorithmica". Part of this work has been presented at the ICALP 2011 Group Testing Workshop; arXiv:1106.368

New Combinatorial Construction Techniques for Low-Density Parity-Check Codes and Systematic Repeat-Accumulate Codes

This paper presents several new construction techniques for low-density parity-check (LDPC) and systematic repeat-accumulate (RA) codes. Based on specific classes of combinatorial designs, the improved code design focuses on high-rate structured codes with constant column weights 3 and higher. The proposed codes are efficiently encodable and exhibit good structural properties. Experimental results on decoding performance with the sum-product algorithm show that the novel codes offer substantial practical application potential, for instance, in high-speed applications in magnetic recording and optical communications channels.Comment: 10 pages; to appear in "IEEE Transactions on Communications

Coded Caching based on Combinatorial Designs

We consider the standard broadcast setup with a single server broadcasting information to a number of clients, each of which contains local storage (called \textit{cache}) of some size, which can store some parts of the available files at the server. The centralized coded caching framework, consists of a caching phase and a delivery phase, both of which are carefully designed in order to use the cache and the channel together optimally. In prior literature, various combinatorial structures have been used to construct coded caching schemes. In this work, we propose a binary matrix model to construct the coded caching scheme. The ones in such a \textit{caching matrix} indicate uncached subfiles at the users. Identity submatrices of the caching matrix represent transmissions in the delivery phase. Using this model, we then propose several novel constructions for coded caching based on the various types of combinatorial designs. While most of the schemes constructed in this work (based on existing designs) have a high cache requirement (uncached fraction being $\Theta(\frac{1}{\sqrt{K}})$ or $\Theta(\frac{1}{K})$, $K$ being the number of users), they provide a rate that is either constant or decreasing ($O(\frac{1}{K})$) with increasing $K$, and moreover require competitively small levels of subpacketization (being $O(K^i), 1\leq i\leq 3$), which is an extremely important parameter in practical applications of coded caching. We mark this work as another attempt to exploit the well-developed theory of combinatorial designs for the problem of constructing caching schemes, utilizing the binary caching model we develop.Comment: 10 pages, Appeared in Proceedings of IEEE ISIT 201

Combinatorial Bounds and Characterizations of Splitting Authentication Codes

We present several generalizations of results for splitting authentication codes by studying the aspect of multi-fold security. As the two primary results, we prove a combinatorial lower bound on the number of encoding rules and a combinatorial characterization of optimal splitting authentication codes that are multi-fold secure against spoofing attacks. The characterization is based on a new type of combinatorial designs, which we introduce and for which basic necessary conditions are given regarding their existence.Comment: 13 pages; to appear in "Cryptography and Communications