170,220 research outputs found
DEMON: a Local-First Discovery Method for Overlapping Communities
Community discovery in complex networks is an interesting problem with a
number of applications, especially in the knowledge extraction task in social
and information networks. However, many large networks often lack a particular
community organization at a global level. In these cases, traditional graph
partitioning algorithms fail to let the latent knowledge embedded in modular
structure emerge, because they impose a top-down global view of a network. We
propose here a simple local-first approach to community discovery, able to
unveil the modular organization of real complex networks. This is achieved by
democratically letting each node vote for the communities it sees surrounding
it in its limited view of the global system, i.e. its ego neighborhood, using a
label propagation algorithm; finally, the local communities are merged into a
global collection. We tested this intuition against the state-of-the-art
overlapping and non-overlapping community discovery methods, and found that our
new method clearly outperforms the others in the quality of the obtained
communities, evaluated by using the extracted communities to predict the
metadata about the nodes of several real world networks. We also show how our
method is deterministic, fully incremental, and has a limited time complexity,
so that it can be used on web-scale real networks.Comment: 9 pages; Proceedings of the 18th ACM SIGKDD International Conference
on Knowledge Discovery and Data Mining, Beijing, China, August 12-16, 201
Mapping Big Data into Knowledge Space with Cognitive Cyber-Infrastructure
Big data research has attracted great attention in science, technology,
industry and society. It is developing with the evolving scientific paradigm,
the fourth industrial revolution, and the transformational innovation of
technologies. However, its nature and fundamental challenge have not been
recognized, and its own methodology has not been formed. This paper explores
and answers the following questions: What is big data? What are the basic
methods for representing, managing and analyzing big data? What is the
relationship between big data and knowledge? Can we find a mapping from big
data into knowledge space? What kind of infrastructure is required to support
not only big data management and analysis but also knowledge discovery, sharing
and management? What is the relationship between big data and science paradigm?
What is the nature and fundamental challenge of big data computing? A
multi-dimensional perspective is presented toward a methodology of big data
computing.Comment: 59 page
edge2vec: Representation learning using edge semantics for biomedical knowledge discovery
Representation learning provides new and powerful graph analytical approaches
and tools for the highly valued data science challenge of mining knowledge
graphs. Since previous graph analytical methods have mostly focused on
homogeneous graphs, an important current challenge is extending this
methodology for richly heterogeneous graphs and knowledge domains. The
biomedical sciences are such a domain, reflecting the complexity of biology,
with entities such as genes, proteins, drugs, diseases, and phenotypes, and
relationships such as gene co-expression, biochemical regulation, and
biomolecular inhibition or activation. Therefore, the semantics of edges and
nodes are critical for representation learning and knowledge discovery in real
world biomedical problems. In this paper, we propose the edge2vec model, which
represents graphs considering edge semantics. An edge-type transition matrix is
trained by an Expectation-Maximization approach, and a stochastic gradient
descent model is employed to learn node embedding on a heterogeneous graph via
the trained transition matrix. edge2vec is validated on three biomedical domain
tasks: biomedical entity classification, compound-gene bioactivity prediction,
and biomedical information retrieval. Results show that by considering
edge-types into node embedding learning in heterogeneous graphs,
\textbf{edge2vec}\ significantly outperforms state-of-the-art models on all
three tasks. We propose this method for its added value relative to existing
graph analytical methodology, and in the real world context of biomedical
knowledge discovery applicability.Comment: 10 page
Analysis of group evolution prediction in complex networks
In the world, in which acceptance and the identification with social
communities are highly desired, the ability to predict evolution of groups over
time appears to be a vital but very complex research problem. Therefore, we
propose a new, adaptable, generic and mutli-stage method for Group Evolution
Prediction (GEP) in complex networks, that facilitates reasoning about the
future states of the recently discovered groups. The precise GEP modularity
enabled us to carry out extensive and versatile empirical studies on many
real-world complex / social networks to analyze the impact of numerous setups
and parameters like time window type and size, group detection method,
evolution chain length, prediction models, etc. Additionally, many new
predictive features reflecting the group state at a given time have been
identified and tested. Some other research problems like enriching learning
evolution chains with external data have been analyzed as well
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