Enlarging instruction streams

The stream fetch engine is a high-performance fetch architecture based on the concept of an instruction stream. We call a sequence of instructions from the target of a taken branch to the next taken branch, potentially containing multiple basic blocks, a stream. The long length of instruction streams makes it possible for the stream fetch engine to provide a high fetch bandwidth and to hide the branch predictor access latency, leading to performance results close to a trace cache at a lower implementation cost and complexity. Therefore, enlarging instruction streams is an excellent way to improve the stream fetch engine. In this paper, we present several hardware and software mechanisms focused on enlarging those streams that finalize at particular branch types. However, our results point out that focusing on particular branch types is not a good strategy due to Amdahl's law. Consequently, we propose the multiple-stream predictor, a novel mechanism that deals with all branch types by combining single streams into long virtual streams. This proposal tolerates the prediction table access latency without requiring the complexity caused by additional hardware mechanisms like prediction overriding. Moreover, it provides high-performance results which are comparable to state-of-the-art fetch architectures but with a simpler design that consumes less energy.Peer ReviewedPostprint (published version

Empirical and Statistical Application Modeling Using on -Chip Performance Monitors.

To analyze the performance of applications and architectures, both programmers and architects desire formal methods to explain anomalous behavior. To this end, we present various methods that utilize non-intrusive, performance-monitoring hardware only recently available on microprocessors to provide further explanations of observed behavior. All the methods attempt to characterize and explain the instruction-level parallelism achieved by codes on different architectures. We also present a prototype tool automating the analysis process to exploit the advantages of the empirical and statistical methods proposed. The empirical, statistical and hybrid methods are discussed and explained with case study results provided. The given methods further the wealth of tools available to programmer\u27s and architects for generally understanding the performance of scientific applications. Specifically, the models and tools presented provide new methods for evaluating and categorizing application performance. The empirical memory model serves to quantify the hierarchical memory performance of applications by inferring the incurred latencies of codes after the effect of latency hiding techniques are realized. The instruction-level model and its extensions model on-chip performance analytically giving insight into inherent performance bottlenecks in superscalar architectures. The statistical model and its hybrid extension provide other methods of categorizing codes via their statistical variations. The PTERA performance tool automates the use of performance counters for use by these methods across platforms making the modeling process easier still. These unique methods provide alternatives to performance modeling and categorizing not available previously in an attempt to utilize the inherent modeling capabilities of performance monitors on commodity processors for scientific applications

Effects of Communication Protocol Stack Offload on Parallel Performance in Clusters

The primary research objective of this dissertation is to demonstrate that the effects of communication protocol stack offload (CPSO) on application execution time can be attributed to the following two complementary sources. First, the application-specific computation may be executed concurrently with the asynchronous communication performed by the communication protocol stack offload engine. Second, the protocol stack processing can be accelerated or decelerated by the offload engine. These two types of performance effects can be quantified with the use of the degree of overlapping Do and degree of acceleration Daccs. The composite communication speedup metrics S_comm(Do, Daccs) can be used in order to quantify the combined effects of the protocol stack offload. This dissertation thesis is validated empirically. The degree of overlapping Do, the degree of acceleration Daccs, and the communication speedup Scomm characteristic of the system configurations under test are derived in the course of experiments performed for the system configurations of interest. It is shown that the proposed metrics adequately describe the effects of the protocol stack offload on the application execution time. Additionally, a set of analytical models of the networking subsystem of a PC-based cluster node is developed. As a result of the modeling, the metrics Do, Daccs, and Scomm are obtained. The models are evaluated as to their complexity and precision by comparing the modeling results with the measured values of Do, Daccs, and Scomm. The primary contributions of this dissertation research are as follows. First, the metric Daccs and Scomm are introduced in order to complement the Do metric in its use for evaluation of the effects of optimizations in the networking subsystem on parallel performance in clusters. The metrics are shown to adequately describe CPSO performance effects. Second, a method for assessing performance effects of CPSO scenarios on application performance is developed and presented. Third, a set of analytical models of cluster node networking subsystems with CPSO capability is developed and characterised as to their complexity and precision of the prediction of the Do and Daccs metrics

Evaluating techniques for parallelization tuning in MPI, OmpSs and MPI/OmpSs

Parallel programming is used to partition a computational problem among multiple processing units and to define how they interact (communicate and synchronize) in order to guarantee the correct result. The performance that is achieved when executing the parallel program on a parallel architecture is usually far from the optimal: computation unbalance and excessive interaction among processing units often cause lost cycles, reducing the efficiency of parallel computation. In this thesis we propose techniques oriented to better exploit parallelism in parallel applications, with emphasis in techniques that increase asynchronism. Theoretically, this type of parallelization tuning promises multiple benefits. First, it should mitigate communication and synchronization delays, thus increasing the overall performance. Furthermore, parallelization tuning should expose additional parallelism and therefore increase the scalability of execution. Finally, increased asynchronism would provide higher tolerance to slower networks and external noise. In the first part of this thesis, we study the potential for tuning MPI parallelism. More specifically, we explore automatic techniques to overlap communication and computation. We propose a speculative messaging technique that increases the overlap and requires no changes of the original MPI application. Our technique automatically identifies the application’s MPI activity and reinterprets that activity using optimally placed non-blocking MPI requests. We demonstrate that this overlapping technique increases the asynchronism of MPI messages, maximizing the overlap, and consequently leading to execution speedup and higher tolerance to bandwidth reduction. However, in the case of realistic scientific workloads, we show that the overlapping potential is significantly limited by the pattern by which each MPI process locally operates on MPI messages. In the second part of this thesis, we study the potential for tuning hybrid MPI/OmpSs parallelism. We try to gain a better understanding of the parallelism of hybrid MPI/OmpSs applications in order to evaluate how these applications would execute on future machines and to predict the execution bottlenecks that are likely to emerge. We explore how MPI/OmpSs applications could scale on the parallel machine with hundreds of cores per node. Furthermore, we investigate how this high parallelism within each node would reflect on the network constraints. We especially focus on identifying critical code sections in MPI/OmpSs. We devised a technique that quickly evaluates, for a given MPI/OmpSs application and the selected target machine, which code section should be optimized in order to gain the highest performance benefits. Also, this thesis studies techniques to quickly explore the potential OmpSs parallelism inherent in applications. We provide mechanisms to easily evaluate potential parallelism of any task decomposition. Furthermore, we describe an iterative trialand-error approach to search for a task decomposition that will expose sufficient parallelism for a given target machine. Finally, we explore potential of automating the iterative approach by capturing the programmers’ experience into an expert system that can autonomously lead the search process. Also, throughout the work on this thesis, we designed development tools that can be useful to other researchers in the field. The most advanced of these tools is Tareador – a tool to help porting MPI applications to MPI/OmpSs programming model. Tareador provides a simple interface to propose some decomposition of a code into OmpSs tasks. Tareador dynamically calculates data dependencies among the annotated tasks, and automatically estimates the potential OmpSs parallelization. Furthermore, Tareador gives additional hints on how to complete the process of porting the application to OmpSs. Tareador already proved itself useful, by being included in the academic classes on parallel programming at UPC.La programación paralela consiste en dividir un problema de computación entre múltiples unidades de procesamiento y definir como interactúan (comunicación y sincronización) para garantizar un resultado correcto. El rendimiento de un programa paralelo normalmente está muy lejos de ser óptimo: el desequilibrio de la carga computacional y la excesiva interacción entre las unidades de procesamiento a menudo causa ciclos perdidos, reduciendo la eficiencia de la computación paralela. En esta tesis proponemos técnicas orientadas a explotar mejor el paralelismo en aplicaciones paralelas, poniendo énfasis en técnicas que incrementan el asincronismo. En teoría, estas técnicas prometen múltiples beneficios. Primero, tendrían que mitigar el retraso de la comunicación y la sincronización, y por lo tanto incrementar el rendimiento global. Además, la calibración de la paralelización tendría que exponer un paralelismo adicional, incrementando la escalabilidad de la ejecución. Finalmente, un incremente en el asincronismo proveería una tolerancia mayor a redes de comunicación lentas y ruido externo. En la primera parte de la tesis, estudiamos el potencial para la calibración del paralelismo a través de MPI. En concreto, exploramos técnicas automáticas para solapar la comunicación con la computación. Proponemos una técnica de mensajería especulativa que incrementa el solapamiento y no requiere cambios en la aplicación MPI original. Nuestra técnica identifica automáticamente la actividad MPI de la aplicación y la reinterpreta usando solicitudes MPI no bloqueantes situadas óptimamente. Demostramos que esta técnica maximiza el solapamiento y, en consecuencia, acelera la ejecución y permite una mayor tolerancia a las reducciones de ancho de banda. Aún así, en el caso de cargas de trabajo científico realistas, mostramos que el potencial de solapamiento está significativamente limitado por el patrón según el cual cada proceso MPI opera localmente en el paso de mensajes. En la segunda parte de esta tesis, exploramos el potencial para calibrar el paralelismo híbrido MPI/OmpSs. Intentamos obtener una comprensión mejor del paralelismo de aplicaciones híbridas MPI/OmpSs para evaluar de qué manera se ejecutarían en futuras máquinas. Exploramos como las aplicaciones MPI/OmpSs pueden escalar en una máquina paralela con centenares de núcleos por nodo. Además, investigamos cómo este paralelismo de cada nodo se reflejaría en las restricciones de la red de comunicación. En especia, nos concentramos en identificar secciones críticas de código en MPI/OmpSs. Hemos concebido una técnica que rápidamente evalúa, para una aplicación MPI/OmpSs dada y la máquina objetivo seleccionada, qué sección de código tendría que ser optimizada para obtener la mayor ganancia de rendimiento. También estudiamos técnicas para explorar rápidamente el paralelismo potencial de OmpSs inherente en las aplicaciones. Proporcionamos mecanismos para evaluar fácilmente el paralelismo potencial de cualquier descomposición en tareas. Además, describimos una aproximación iterativa para buscar una descomposición en tareas que mostrará el suficiente paralelismo en la máquina objetivo dada. Para finalizar, exploramos el potencial para automatizar la aproximación iterativa. En el trabajo expuesto en esta tesis hemos diseñado herramientas que pueden ser útiles para otros investigadores de este campo. La más avanzada es Tareador, una herramienta para ayudar a migrar aplicaciones al modelo de programación MPI/OmpSs. Tareador proporciona una interfaz simple para proponer una descomposición del código en tareas OmpSs. Tareador también calcula dinámicamente las dependencias de datos entre las tareas anotadas, y automáticamente estima el potencial de paralelización OmpSs. Por último, Tareador da indicaciones adicionales sobre como completar el proceso de migración a OmpSs. Tareador ya se ha mostrado útil al ser incluido en las clases de programación de la UPC

An efficient design space exploration framework to optimize power-efficient heterogeneous many-core multi-threading embedded processor architectures

By the middle of this decade, uniprocessor architecture performance had hit a roadblock due to a combination of factors, such as excessive power dissipation due to high operating frequencies, growing memory access latencies, diminishing returns on deeper instruction pipelines, and a saturation of available instruction level parallelism in applications. An attractive and viable alternative embraced by all the processor vendors was multi-core architectures where throughput is improved by using micro-architectural features such as multiple processor cores, interconnects and low latency shared caches integrated on a single chip. The individual cores are often simpler than uniprocessor counterparts, use hardware multi-threading to exploit thread-level parallelism and latency hiding and typically achieve better performance-power figures. The overwhelming success of the multi-core microprocessors in both high performance and embedded computing platforms motivated chip architects to dramatically scale the multi-core processors to many-cores which will include hundreds of cores on-chip to further improve throughput. With such complex large scale architectures however, several key design issues need to be addressed. First, a wide range of micro- architectural parameters such as L1 caches, load/store queues, shared cache structures and interconnection topologies and non-linear interactions between them define a vast non-linear multi-variate micro-architectural design space of many-core processors; the traditional method of using extensive in-loop simulation to explore the design space is simply not practical. Second, to accurately evaluate the performance (measured in terms of cycles per instruction (CPI)) of a candidate design, the contention at the shared cache must be accounted in addition to cycle-by-cycle behavior of the large number of cores which superlinearly increases the number of simulation cycles per iteration of the design exploration. Third, single thread performance does not scale linearly with number of hardware threads per core and number of cores due to memory wall effect. This means that at every step of the design process designers must ensure that single thread performance is not unacceptably slowed down while increasing overall throughput. While all these factors affect design decisions in both high performance and embedded many-core processors, the design of embedded processors required for complex embedded applications such as networking, smart power grids, battlefield decision-making, consumer electronics and biomedical devices to name a few, is fundamentally different from its high performance counterpart because of the need to consider (i) low power and (ii) real-time operations. This implies the design objective for embedded many-core processors cannot be to simply maximize performance, but improve it in such a way that overall power dissipation is minimized and all real-time constraints are met. This necessitates additional power estimation models right at the design stage to accurately measure the cost and reliability of all the candidate designs during the exploration phase. In this dissertation, a statistical machine learning (SML) based design exploration framework is presented which employs an execution-driven cycle- accurate simulator to accurately measure power and performance of embedded many-core processors. The embedded many-core processor domain is Network Processors (NePs) used to processed network IP packets. Future generation NePs required to operate at terabits per second network speeds captures all the aspects of a complex embedded application consisting of shared data structures, large volume of compute-intensive and data-intensive real-time bound tasks and a high level of task (packet) level parallelism. Statistical machine learning (SML) is used to efficiently model performance and power of candidate designs in terms of wide ranges of micro-architectural parameters. The method inherently minimizes number of in-loop simulations in the exploration framework and also efficiently captures the non-linear interactions between the micro-architectural design parameters. To ensure scalability, the design space is partitioned into (i) core-level micro-architectural parameters to optimize single core architectures subject to the real-time constraints and (ii) shared memory level micro- architectural parameters to explore the shared interconnection network and shared cache memory architectures and achieves overall optimality. The cost function of our exploration algorithm is the total power dissipation which is minimized, subject to the constraints of real-time throughput (as determined from the terabit optical network router line-speed) required in IP packet processing embedded application

Tackling Exascale Software Challenges in Molecular Dynamics Simulations with GROMACS

GROMACS is a widely used package for biomolecular simulation, and over the last two decades it has evolved from small-scale efficiency to advanced heterogeneous acceleration and multi-level parallelism targeting some of the largest supercomputers in the world. Here, we describe some of the ways we have been able to realize this through the use of parallelization on all levels, combined with a constant focus on absolute performance. Release 4.6 of GROMACS uses SIMD acceleration on a wide range of architectures, GPU offloading acceleration, and both OpenMP and MPI parallelism within and between nodes, respectively. The recent work on acceleration made it necessary to revisit the fundamental algorithms of molecular simulation, including the concept of neighborsearching, and we discuss the present and future challenges we see for exascale simulation - in particular a very fine-grained task parallelism. We also discuss the software management, code peer review and continuous integration testing required for a project of this complexity.Comment: EASC 2014 conference proceedin