24,757 research outputs found
Fast counting with tensor networks
We introduce tensor network contraction algorithms for counting satisfying
assignments of constraint satisfaction problems (#CSPs). We represent each
arbitrary #CSP formula as a tensor network, whose full contraction yields the
number of satisfying assignments of that formula, and use graph theoretical
methods to determine favorable orders of contraction. We employ our heuristics
for the solution of #P-hard counting boolean satisfiability (#SAT) problems,
namely monotone #1-in-3SAT and #Cubic-Vertex-Cover, and find that they
outperform state-of-the-art solvers by a significant margin.Comment: v2: added results for monotone #1-in-3SAT; published versio
Solving constraint-satisfaction problems with distributed neocortical-like neuronal networks
Finding actions that satisfy the constraints imposed by both external inputs
and internal representations is central to decision making. We demonstrate that
some important classes of constraint satisfaction problems (CSPs) can be solved
by networks composed of homogeneous cooperative-competitive modules that have
connectivity similar to motifs observed in the superficial layers of neocortex.
The winner-take-all modules are sparsely coupled by programming neurons that
embed the constraints onto the otherwise homogeneous modular computational
substrate. We show rules that embed any instance of the CSPs planar four-color
graph coloring, maximum independent set, and Sudoku on this substrate, and
provide mathematical proofs that guarantee these graph coloring problems will
convergence to a solution. The network is composed of non-saturating linear
threshold neurons. Their lack of right saturation allows the overall network to
explore the problem space driven through the unstable dynamics generated by
recurrent excitation. The direction of exploration is steered by the constraint
neurons. While many problems can be solved using only linear inhibitory
constraints, network performance on hard problems benefits significantly when
these negative constraints are implemented by non-linear multiplicative
inhibition. Overall, our results demonstrate the importance of instability
rather than stability in network computation, and also offer insight into the
computational role of dual inhibitory mechanisms in neural circuits.Comment: Accepted manuscript, in press, Neural Computation (2018
Solving Hard Computational Problems Efficiently: Asymptotic Parametric Complexity 3-Coloring Algorithm
Many practical problems in almost all scientific and technological
disciplines have been classified as computationally hard (NP-hard or even
NP-complete). In life sciences, combinatorial optimization problems frequently
arise in molecular biology, e.g., genome sequencing; global alignment of
multiple genomes; identifying siblings or discovery of dysregulated pathways.In
almost all of these problems, there is the need for proving a hypothesis about
certain property of an object that can be present only when it adopts some
particular admissible structure (an NP-certificate) or be absent (no admissible
structure), however, none of the standard approaches can discard the hypothesis
when no solution can be found, since none can provide a proof that there is no
admissible structure. This article presents an algorithm that introduces a
novel type of solution method to "efficiently" solve the graph 3-coloring
problem; an NP-complete problem. The proposed method provides certificates
(proofs) in both cases: present or absent, so it is possible to accept or
reject the hypothesis on the basis of a rigorous proof. It provides exact
solutions and is polynomial-time (i.e., efficient) however parametric. The only
requirement is sufficient computational power, which is controlled by the
parameter . Nevertheless, here it is proved that the
probability of requiring a value of to obtain a solution for a
random graph decreases exponentially: , making
tractable almost all problem instances. Thorough experimental analyses were
performed. The algorithm was tested on random graphs, planar graphs and
4-regular planar graphs. The obtained experimental results are in accordance
with the theoretical expected results.Comment: Working pape
Exact Localisations of Feedback Sets
The feedback arc (vertex) set problem, shortened FASP (FVSP), is to transform
a given multi digraph into an acyclic graph by deleting as few arcs
(vertices) as possible. Due to the results of Richard M. Karp in 1972 it is one
of the classic NP-complete problems. An important contribution of this paper is
that the subgraphs , of all elementary
cycles or simple cycles running through some arc , can be computed in
and , respectively. We use
this fact and introduce the notion of the essential minor and isolated cycles,
which yield a priori problem size reductions and in the special case of so
called resolvable graphs an exact solution in . We show
that weighted versions of the FASP and FVSP possess a Bellman decomposition,
which yields exact solutions using a dynamic programming technique in times
and
, where , , respectively. The parameters can
be computed in , ,
respectively and denote the maximal dimension of the cycle space of all
appearing meta graphs, decoding the intersection behavior of the cycles.
Consequently, equal zero if all meta graphs are trees. Moreover, we
deliver several heuristics and discuss how to control their variation from the
optimum. Summarizing, the presented results allow us to suggest a strategy for
an implementation of a fast and accurate FASP/FVSP-SOLVER
A tree-decomposed transfer matrix for computing exact Potts model partition functions for arbitrary graphs, with applications to planar graph colourings
Combining tree decomposition and transfer matrix techniques provides a very
general algorithm for computing exact partition functions of statistical models
defined on arbitrary graphs. The algorithm is particularly efficient in the
case of planar graphs. We illustrate it by computing the Potts model partition
functions and chromatic polynomials (the number of proper vertex colourings
using Q colours) for large samples of random planar graphs with up to N=100
vertices. In the latter case, our algorithm yields a sub-exponential average
running time of ~ exp(1.516 sqrt(N)), a substantial improvement over the
exponential running time ~ exp(0.245 N) provided by the hitherto best known
algorithm. We study the statistics of chromatic roots of random planar graphs
in some detail, comparing the findings with results for finite pieces of a
regular lattice.Comment: 5 pages, 3 figures. Version 2 has been substantially expanded.
Version 3 shows that the worst-case running time is sub-exponential in the
number of vertice
Planar Ultrametric Rounding for Image Segmentation
We study the problem of hierarchical clustering on planar graphs. We
formulate this in terms of an LP relaxation of ultrametric rounding. To solve
this LP efficiently we introduce a dual cutting plane scheme that uses minimum
cost perfect matching as a subroutine in order to efficiently explore the space
of planar partitions. We apply our algorithm to the problem of hierarchical
image segmentation
Solving a "Hard" Problem to Approximate an "Easy" One: Heuristics for Maximum Matchings and Maximum Traveling Salesman Problems
We consider geometric instances of the Maximum Weighted Matching Problem
(MWMP) and the Maximum Traveling Salesman Problem (MTSP) with up to 3,000,000
vertices. Making use of a geometric duality relationship between MWMP, MTSP,
and the Fermat-Weber-Problem (FWP), we develop a heuristic approach that yields
in near-linear time solutions as well as upper bounds. Using various
computational tools, we get solutions within considerably less than 1% of the
optimum.
An interesting feature of our approach is that, even though an FWP is hard to
compute in theory and Edmonds' algorithm for maximum weighted matching yields a
polynomial solution for the MWMP, the practical behavior is just the opposite,
and we can solve the FWP with high accuracy in order to find a good heuristic
solution for the MWMP.Comment: 20 pages, 14 figures, Latex, to appear in Journal of Experimental
Algorithms, 200
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