A Bulk-Parallel Priority Queue in External Memory with STXXL

We propose the design and an implementation of a bulk-parallel external memory priority queue to take advantage of both shared-memory parallelism and high external memory transfer speeds to parallel disks. To achieve higher performance by decoupling item insertions and extractions, we offer two parallelization interfaces: one using "bulk" sequences, the other by defining "limit" items. In the design, we discuss how to parallelize insertions using multiple heaps, and how to calculate a dynamic prediction sequence to prefetch blocks and apply parallel multiway merge for extraction. Our experimental results show that in the selected benchmarks the priority queue reaches 75% of the full parallel I/O bandwidth of rotational disks and and 65% of SSDs, or the speed of sorting in external memory when bounded by computation.Comment: extended version of SEA'15 conference pape

Prefetching and Caching Techniques in File Systems for Mimd Multiprocessors

The increasing speed of the most powerful computers, especially multiprocessors, makes it difficult to provide sufficient I/O bandwidth to keep them running at full speed for the largest problems. Trends show that the difference in the speed of disk hardware and the speed of processors is increasing, with I/O severely limiting the performance of otherwise fast machines. This widening access-time gap is known as the “I/O bottleneck crisis.” One solution to the crisis, suggested by many researchers, is to use many disks in parallel to increase the overall bandwidth. \par This dissertation studies some of the file system issues needed to get high performance from parallel disk systems, since parallel hardware alone cannot guarantee good performance. The target systems are large MIMD multiprocessors used for scientific applications, with large files spread over multiple disks attached in parallel. The focus is on automatic caching and prefetching techniques. We show that caching and prefetching can transparently provide the power of parallel disk hardware to both sequential and parallel applications using a conventional file system interface. We also propose a new file system interface (compatible with the conventional interface) that could make it easier to use parallel disks effectively. \par Our methodology is a mixture of implementation and simulation, using a software testbed that we built to run on a BBN GP1000 multiprocessor. The testbed simulates the disks and fully implements the caching and prefetching policies. Using a synthetic workload as input, we use the testbed in an extensive set of experiments. The results show that prefetching and caching improved the performance of parallel file systems, often dramatically

Prefetching techniques for client server object-oriented database systems

The performance of many object-oriented database applications suffers from the page fetch latency which is determined by the expense of disk access. In this work we suggest several prefetching techniques to avoid, or at least to reduce, page fetch latency. In practice no prediction technique is perfect and no prefetching technique can entirely eliminate delay due to page fetch latency. Therefore we are interested in the trade-off between the level of accuracy required for obtaining good results in terms of elapsed time reduction and the processing overhead needed to achieve this level of accuracy. If prefetching accuracy is high then the total elapsed time of an application can be reduced significantly otherwise if the prefetching accuracy is low, many incorrect pages are prefetched and the extra load on the client, network, server and disks decreases the whole system performance. Access pattern of object-oriented databases are often complex and usually hard to predict accurately. The ..

Algorithmic ramifications of prefetching in memory hierarchy

External Memory models, most notable being the I-O Model [3], capture the effects of memory hierarchy and aid in algorithm design. More than a decade of architectural advancements have led to new features not captured in the I-O model - most notably the prefetching capability. We propose a relatively simple Prefetch model that incorporates data prefetching in the traditional I-O models and show how to design algorithms that can attain close to peak memory bandwidth. Unlike (the inverse of) memory latency, the memory bandwidth is much closer to the processing speed, thereby, intelligent use of prefetching can considerably mitigate the I-O bottleneck. For some fundamental problems, our algorithms attain running times approaching that of the idealized Random Access Machines under reasonable assumptions. Our work also explains the significantly superior performance of the I-O efficient algorithms in systems that support prefetching compared to ones that do not

Interactive media server with media synchronized raid storage system

We propose an efficient placement algorithm and per-disk prefetching method to effectively support interactive operations in the media server. Our placement policy is incorporated with an encoder having a special bitcount control scheme that repeatedly tunes quantization parameters to adjust the bitcounts of video frames. This encoder can generate coded frames whose sizes are synchronized with the RAID stripe size, so that when various fast-forward levels are accessed we can reduce the seek and rotational latency and enhance the disk throughput of each disk in the RAID system. In the experimental results, the proposed placement policy and bitrate control scheme can significantly improve the average service time, which can enlarge the capacity of the interactive media server

HEC: Collaborative Research: SAM^2 Toolkit: Scalable and Adaptive Metadata Management for High-End Computing

The increasing demand for Exa-byte-scale storage capacity by high end computing applications requires a higher level of scalability and dependability than that provided by current file and storage systems. The proposal deals with file systems research for metadata management of scalable cluster-based parallel and distributed file storage systems in the HEC environment. It aims to develop a scalable and adaptive metadata management (SAM2) toolkit to extend features of and fully leverage the peak performance promised by state-of-the-art cluster-based parallel and distributed file storage systems used by the high performance computing community. There is a large body of research on data movement and management scaling, however, the need to scale up the attributes of cluster-based file systems and I/O, that is, metadata, has been underestimated. An understanding of the characteristics of metadata traffic, and an application of proper load-balancing, caching, prefetching and grouping mechanisms to perform metadata management correspondingly, will lead to a high scalability. It is anticipated that by appropriately plugging the scalable and adaptive metadata management components into the state-of-the-art cluster-based parallel and distributed file storage systems one could potentially increase the performance of applications and file systems, and help translate the promise and potential of high peak performance of such systems to real application performance improvements. The project involves the following components: 1. Develop multi-variable forecasting models to analyze and predict file metadata access patterns. 2. Develop scalable and adaptive file name mapping schemes using the duplicative Bloom filter array technique to enforce load balance and increase scalability 3. Develop decentralized, locality-aware metadata grouping schemes to facilitate the bulk metadata operations such as prefetching. 4. Develop an adaptive cache coherence protocol using a distributed shared object model for client-side and server-side metadata caching. 5. Prototype the SAM2 components into the state-of-the-art parallel virtual file system PVFS2 and a distributed storage data caching system, set up an experimental framework for a DOE CMS Tier 2 site at University of Nebraska-Lincoln and conduct benchmark, evaluation and validation studies

Implications of non-volatile memory as primary storage for database management systems

Traditional Database Management System (DBMS) software relies on hard disks for storing relational data. Hard disks are cheap, persistent, and offer huge storage capacities. However, data retrieval latency for hard disks is extremely high. To hide this latency, DRAM is used as an intermediate storage. DRAM is significantly faster than disk, but deployed in smaller capacities due to cost and power constraints, and without the necessary persistency feature that disks have. Non-Volatile Memory (NVM) is an emerging storage class technology which promises the best of both worlds. It can offer large storage capacities, due to better scaling and cost metrics than DRAM, and is non-volatile (persistent) like hard disks. At the same time, its data retrieval time is much lower than that of hard disks and it is also byte-addressable like DRAM. In this paper, we explore the implications of employing NVM as primary storage for DBMS. In other words, we investigate the modifications necessary to be applied on a traditional relational DBMS to take advantage of NVM features. As a case study, we have modified the storage engine (SE) of PostgreSQL enabling efficient use of NVM hardware. We detail the necessary changes and challenges such modifications entail and evaluate them using a comprehensive emulation platform. Results indicate that our modified SE reduces query execution time by up to 40% and 14.4% when compared to disk and NVM storage, with average reductions of 20.5% and 4.5%, respectively.The research leading to these results has received funding from the European Union’s 7th Framework Programme under grant agreement number 318633, the Ministry of Science and Technology of Spain under contract TIN2015-65316-P, and a HiPEAC collaboration grant awarded to Naveed Ul Mustafa.Peer ReviewedPostprint (author's final draft

Practical Prefetching Techniques for Parallel File Systems

Parallel disk subsystems have been proposed as one way to close the gap between processor and disk speeds. In a previous paper we showed that prefetching and caching have the potential to deliver the performance benefits of parallel file systems to parallel applications. In this paper we describe experiments with practical prefetching policies, and show that prefetching can be implemented efficiently even for the more complex parallel file access patterns. We test these policies across a range of architectural parameters