Transfer Learning for Scientific Data Chain Extraction in Small Chemical Corpus with BERT-CRF Model

Computational chemistry develops fast in recent years due to the rapid growth and breakthroughs in AI. Thanks for the progress in natural language processing, researchers can extract more fine-grained knowledge in publications to stimulate the development in computational chemistry. While the works and corpora in chemical entity extraction have been restricted in the biomedicine or life science field instead of the chemistry field, we build a new corpus in chemical bond field annotated for 7 types of entities: compound, solvent, method, bond, reaction, pKa and pKa value. This paper presents a novel BERT-CRF model to build scientific chemical data chains by extracting 7 chemical entities and relations from publications. And we propose a joint model to extract the entities and relations simultaneously. Experimental results on our Chemical Special Corpus demonstrate that we achieve state-of-art and competitive NER performance

Structure Regularized Bidirectional Recurrent Convolutional Neural Network for Relation Classification

Relation classification is an important semantic processing task in the field of natural language processing (NLP). In this paper, we present a novel model, Structure Regularized Bidirectional Recurrent Convolutional Neural Network(SR-BRCNN), to classify the relation of two entities in a sentence, and the new dataset of Chinese Sanwen for named entity recognition and relation classification. Some state-of-the-art systems concentrate on modeling the shortest dependency path (SDP) between two entities leveraging convolutional or recurrent neural networks. We further explore how to make full use of the dependency relations information in the SDP and how to improve the model by the method of structure regularization. We propose a structure regularized model to learn relation representations along the SDP extracted from the forest formed by the structure regularized dependency tree, which benefits reducing the complexity of the whole model and helps improve the $F_{1}$ score by 10.3. Experimental results show that our method outperforms the state-of-the-art approaches on the Chinese Sanwen task and performs as well on the SemEval-2010 Task 8 dataset\footnote{The Chinese Sanwen corpus this paper developed and used will be released in the further.Comment: arXiv admin note: text overlap with arXiv:1411.6243 by other author

An Event Network for Exploring Open Information

In this paper, an event network is presented for exploring open information, where linguistic units about an event are organized for analysing. The process is divided into three steps: document event detection, event network construction and event network analysis. First, by implementing event detection or tracking, documents are retrospectively (or on-line) organized into document events. Secondly, for each of the document event, linguistic units are extracted and combined into event networks. Thirdly, various analytic methods are proposed for event network analysis. In our application methodologies are presented for exploring open information

One for All: Towards Language Independent Named Entity Linking

Entity linking (EL) is the task of disambiguating mentions in text by associating them with entries in a predefined database of mentions (persons, organizations, etc). Most previous EL research has focused mainly on one language, English, with less attention being paid to other languages, such as Spanish or Chinese. In this paper, we introduce LIEL, a Language Independent Entity Linking system, which provides an EL framework which, once trained on one language, works remarkably well on a number of different languages without change. LIEL makes a joint global prediction over the entire document, employing a discriminative reranking framework with many domain and language-independent feature functions. Experiments on numerous benchmark datasets, show that the proposed system, once trained on one language, English, outperforms several state-of-the-art systems in English (by 4 points) and the trained model also works very well on Spanish (14 points better than a competitor system), demonstrating the viability of the approach.Comment: Association for Computational Linguistics (ACL), 201

Supervised and Unsupervised Ensembling for Knowledge Base Population

We present results on combining supervised and unsupervised methods to ensemble multiple systems for two popular Knowledge Base Population (KBP) tasks, Cold Start Slot Filling (CSSF) and Tri-lingual Entity Discovery and Linking (TEDL). We demonstrate that our combined system along with auxiliary features outperforms the best performing system for both tasks in the 2015 competition, several ensembling baselines, as well as the state-of-the-art stacking approach to ensembling KBP systems. The success of our technique on two different and challenging problems demonstrates the power and generality of our combined approach to ensembling

Building a Fine-Grained Entity Typing System Overnight for a New X (X = Language, Domain, Genre)

Recent research has shown great progress on fine-grained entity typing. Most existing methods require pre-defining a set of types and training a multi-class classifier from a large labeled data set based on multi-level linguistic features. They are thus limited to certain domains, genres and languages. In this paper, we propose a novel unsupervised entity typing framework by combining symbolic and distributional semantics. We start from learning general embeddings for each entity mention, compose the embeddings of specific contexts using linguistic structures, link the mention to knowledge bases and learn its related knowledge representations. Then we develop a novel joint hierarchical clustering and linking algorithm to type all mentions using these representations. This framework doesn't rely on any annotated data, predefined typing schema, or hand-crafted features, therefore it can be quickly adapted to a new domain, genre and language. Furthermore, it has great flexibility at incorporating linguistic structures (e.g., Abstract Meaning Representation (AMR), dependency relations) to improve specific context representation. Experiments on genres (news and discussion forum) show comparable performance with state-of-the-art supervised typing systems trained from a large amount of labeled data. Results on various languages (English, Chinese, Japanese, Hausa, and Yoruba) and domains (general and biomedical) demonstrate the portability of our framework

Encoding Implicit Relation Requirements for Relation Extraction: A Joint Inference Approach

Relation extraction is the task of identifying predefined relationship between entities, and plays an essential role in information extraction, knowledge base construction, question answering and so on. Most existing relation extractors make predictions for each entity pair locally and individually, while ignoring implicit global clues available across different entity pairs and in the knowledge base, which often leads to conflicts among local predictions from different entity pairs. This paper proposes a joint inference framework that employs such global clues to resolve disagreements among local predictions. We exploit two kinds of clues to generate constraints which can capture the implicit type and cardinality requirements of a relation. Those constraints can be examined in either hard style or soft style, both of which can be effectively explored in an integer linear program formulation. Experimental results on both English and Chinese datasets show that our proposed framework can effectively utilize those two categories of global clues and resolve the disagreements among local predictions, thus improve various relation extractors when such clues are applicable to the datasets. Our experiments also indicate that the clues learnt automatically from existing knowledge bases perform comparably to or better than those refined by human.Comment: to appear in Artificial Intelligenc

A Hierarchical Distance-dependent Bayesian Model for Event Coreference Resolution

We present a novel hierarchical distance-dependent Bayesian model for event coreference resolution. While existing generative models for event coreference resolution are completely unsupervised, our model allows for the incorporation of pairwise distances between event mentions -- information that is widely used in supervised coreference models to guide the generative clustering processing for better event clustering both within and across documents. We model the distances between event mentions using a feature-rich learnable distance function and encode them as Bayesian priors for nonparametric clustering. Experiments on the ECB+ corpus show that our model outperforms state-of-the-art methods for both within- and cross-document event coreference resolution.Comment: 12 pages, 3 figure

Logician: A Unified End-to-End Neural Approach for Open-Domain Information Extraction

In this paper, we consider the problem of open information extraction (OIE) for extracting entity and relation level intermediate structures from sentences in open-domain. We focus on four types of valuable intermediate structures (Relation, Attribute, Description, and Concept), and propose a unified knowledge expression form, SAOKE, to express them. We publicly release a data set which contains more than forty thousand sentences and the corresponding facts in the SAOKE format labeled by crowd-sourcing. To our knowledge, this is the largest publicly available human labeled data set for open information extraction tasks. Using this labeled SAOKE data set, we train an end-to-end neural model using the sequenceto-sequence paradigm, called Logician, to transform sentences into facts. For each sentence, different to existing algorithms which generally focus on extracting each single fact without concerning other possible facts, Logician performs a global optimization over all possible involved facts, in which facts not only compete with each other to attract the attention of words, but also cooperate to share words. An experimental study on various types of open domain relation extraction tasks reveals the consistent superiority of Logician to other states-of-the-art algorithms. The experiments verify the reasonableness of SAOKE format, the valuableness of SAOKE data set, the effectiveness of the proposed Logician model, and the feasibility of the methodology to apply end-to-end learning paradigm on supervised data sets for the challenging tasks of open information extraction

Relation Extraction : A Survey

With the advent of the Internet, large amount of digital text is generated everyday in the form of news articles, research publications, blogs, question answering forums and social media. It is important to develop techniques for extracting information automatically from these documents, as lot of important information is hidden within them. This extracted information can be used to improve access and management of knowledge hidden in large text corpora. Several applications such as Question Answering, Information Retrieval would benefit from this information. Entities like persons and organizations, form the most basic unit of the information. Occurrences of entities in a sentence are often linked through well-defined relations; e.g., occurrences of person and organization in a sentence may be linked through relations such as employed at. The task of Relation Extraction (RE) is to identify such relations automatically. In this paper, we survey several important supervised, semi-supervised and unsupervised RE techniques. We also cover the paradigms of Open Information Extraction (OIE) and Distant Supervision. Finally, we describe some of the recent trends in the RE techniques and possible future research directions. This survey would be useful for three kinds of readers - i) Newcomers in the field who want to quickly learn about RE; ii) Researchers who want to know how the various RE techniques evolved over time and what are possible future research directions and iii) Practitioners who just need to know which RE technique works best in various settings