Knowledge Rich Natural Language Queries over Structured Biological Databases

Increasingly, keyword, natural language and NoSQL queries are being used for information retrieval from traditional as well as non-traditional databases such as web, document, image, GIS, legal, and health databases. While their popularity are undeniable for obvious reasons, their engineering is far from simple. In most part, semantics and intent preserving mapping of a well understood natural language query expressed over a structured database schema to a structured query language is still a difficult task, and research to tame the complexity is intense. In this paper, we propose a multi-level knowledge-based middleware to facilitate such mappings that separate the conceptual level from the physical level. We augment these multi-level abstractions with a concept reasoner and a query strategy engine to dynamically link arbitrary natural language querying to well defined structured queries. We demonstrate the feasibility of our approach by presenting a Datalog based prototype system, called BioSmart, that can compute responses to arbitrary natural language queries over arbitrary databases once a syntactic classification of the natural language query is made

An introduction to Graph Data Management

A graph database is a database where the data structures for the schema and/or instances are modeled as a (labeled)(directed) graph or generalizations of it, and where querying is expressed by graph-oriented operations and type constructors. In this article we present the basic notions of graph databases, give an historical overview of its main development, and study the main current systems that implement them

Learning a Neural Semantic Parser from User Feedback

We present an approach to rapidly and easily build natural language interfaces to databases for new domains, whose performance improves over time based on user feedback, and requires minimal intervention. To achieve this, we adapt neural sequence models to map utterances directly to SQL with its full expressivity, bypassing any intermediate meaning representations. These models are immediately deployed online to solicit feedback from real users to flag incorrect queries. Finally, the popularity of SQL facilitates gathering annotations for incorrect predictions using the crowd, which is directly used to improve our models. This complete feedback loop, without intermediate representations or database specific engineering, opens up new ways of building high quality semantic parsers. Experiments suggest that this approach can be deployed quickly for any new target domain, as we show by learning a semantic parser for an online academic database from scratch.Comment: Accepted at ACL 201

Learning from AI : new trends in database technology

Recently some researchers in the areas of database data modelling and knowledge representations in artificial intelligence have recognized that they share many common goals. In this survey paper we show the relationship between database and artificial intelligence research. We show that there has been a tendency for data models to incorporate more modelling techniques developed for knowledge representations in artificial intelligence as the desire to incorporate more application oriented semantics, user friendliness, and flexibility has increased. Increasing the semantics of the representation is the key to capturing the "reality" of the database environment, increasing user friendliness, and facilitating the support of multiple, possibly conflicting, user views of the information contained in a database

Bridging the Semantic Gap with SQL Query Logs in Natural Language Interfaces to Databases

A critical challenge in constructing a natural language interface to database (NLIDB) is bridging the semantic gap between a natural language query (NLQ) and the underlying data. Two specific ways this challenge exhibits itself is through keyword mapping and join path inference. Keyword mapping is the task of mapping individual keywords in the original NLQ to database elements (such as relations, attributes or values). It is challenging due to the ambiguity in mapping the user's mental model and diction to the schema definition and contents of the underlying database. Join path inference is the process of selecting the relations and join conditions in the FROM clause of the final SQL query, and is difficult because NLIDB users lack the knowledge of the database schema or SQL and therefore cannot explicitly specify the intermediate tables and joins needed to construct a final SQL query. In this paper, we propose leveraging information from the SQL query log of a database to enhance the performance of existing NLIDBs with respect to these challenges. We present a system Templar that can be used to augment existing NLIDBs. Our extensive experimental evaluation demonstrates the effectiveness of our approach, leading up to 138% improvement in top-1 accuracy in existing NLIDBs by leveraging SQL query log information.Comment: Accepted to IEEE International Conference on Data Engineering (ICDE) 201

Intuitive querying of e-Health data repositories

At the centre of the Clinical e-Science Framework (CLEF) project is a repository of well organised, detailed clinical histories, encoded as data that will be available for use in clinical care and in-silico medical experiments. An integral part of the CLEF workbench is a tool to allow biomedical researchers and clinicians to query – in an intuitive way – the repository of patient data. This paper describes the CLEF query editing interface, which makes use of natural language generation techniques in order to alleviate some of the problems generally faced by natural language and graphical query interfaces. The query interface also incorporates an answer renderer that dynamically generates responses in both natural language text and graphics