17,920 research outputs found
Parameters estimation for spatio-temporal maximum entropy distributions: application to neural spike trains
We propose a numerical method to learn Maximum Entropy (MaxEnt) distributions
with spatio-temporal constraints from experimental spike trains. This is an
extension of two papers [10] and [4] who proposed the estimation of parameters
where only spatial constraints were taken into account. The extension we
propose allows to properly handle memory effects in spike statistics, for large
sized neural networks.Comment: 34 pages, 33 figure
Spatio-temporal spike trains analysis for large scale networks using maximum entropy principle and Monte-Carlo method
Understanding the dynamics of neural networks is a major challenge in
experimental neuroscience. For that purpose, a modelling of the recorded
activity that reproduces the main statistics of the data is required. In a
first part, we present a review on recent results dealing with spike train
statistics analysis using maximum entropy models (MaxEnt). Most of these
studies have been focusing on modelling synchronous spike patterns, leaving
aside the temporal dynamics of the neural activity. However, the maximum
entropy principle can be generalized to the temporal case, leading to Markovian
models where memory effects and time correlations in the dynamics are properly
taken into account. In a second part, we present a new method based on
Monte-Carlo sampling which is suited for the fitting of large-scale
spatio-temporal MaxEnt models. The formalism and the tools presented here will
be essential to fit MaxEnt spatio-temporal models to large neural ensembles.Comment: 41 pages, 10 figure
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