Mobile collaborative cloudless computing

Although the computational power of mobile devices has been increasing, it is still not enough for some classes of applications. In the present, these applications delegate the computing power burden on servers located on the Internet. This model assumes an always-on Internet connectivity and implies a non-negligible latency. The thesis addresses the challenges and contributions posed to the application of a mobile collaborative computing environment concept to wireless networks. The goal is to define a reference architecture for high performance mobile applications. Current work is focused on efficient data dissemination on a highly transitive environment, suitable to many mobile applications and also to the reputation and incentive system available on this mobile collaborative computing environment. For this we are improving our already published reputation/incentive algorithm with knowledge from the usage pattern from the eduroam wireless network in the Lisbon area

Collaborative working - from HPC, Vis to AG developments in Australia

The large distances that we face in Australia mean that electronically enabled remote collaborations are gaining traction. The Access Grid (AG), for multi-site, room-to-room meetings and collaborative working, is now widely used in the university sector. Decades of R&D and infrastructure building in High Performance Computing (HPC), cyber-infrastructure and now e-infrastructure, have led to a rich fabric of distributed computing, data and user interface technologies in Australia. We will present recent AG developments including shared files systems based on the Storage Resource Broker (SRB), shared software applications (eg molecular viewers, GIS) and High Definition Video capabilities, all integrated within the AG systems. These systems now provide a richer collaborative working environment for accessing e-infrastructure facilities

CCCORE: Cloud Container for Collaborative Research

Cloud-based research collaboration platforms render scalable, secure and inventive environments that enabled academic and scientific researchers to share research data, applications and provide access to high- performance computing resources. Dynamic allocation of resources according to the unpredictable needs of applications used by researchers is a key challenge in collaborative research environments. We propose the design of Cloud Container based Collaborative Research (CCCORE) framework to address dynamic resource provisioning according to the variable workload of compute and data-intensive applications or analysis tools used by researchers. Our proposed approach relies on–demand, customized containerization and comprehensive assessment of resource requirements to achieve optimal resource allocation in a dynamic collaborative research environment. We propose algorithms for dynamic resource allocation problem in a collaborative research environment, which aim to minimize finish time, improve throughput and achieve optimal resource utilization by employing the underutilized residual resources

Exposing Issues and Challenges in Performance of Cloud Computing Services.

In current era of high performance computing, cloud computing is considered as new paradigm of ubiquitous computing. Peoples are changing their views and accordingly demand of consumer services for real world applications is getting diversified. Most of all global IT leader companies have started to consume cloud services in one or another way by putting their demands. The cloud is rapidly maturing towards its goal to satisfy federated need of consumer’s need for real-world applications. It is tried to reflect survey of current research related to open issues associated with clouds service performance with consideration of maintenance of performance and quality management and also simulates service level agreement based testing on the large scale commercial testing environment. One of the key aspect of the existing approach is it cloud environment need to achieve more flexibility to satisfy diversified users need and providers service delivery model. A collaborative system shall apply the concept of the cloud service performance testing to reduce the mitigations in cloud data and loss of the service availability and data integrity aspects

Context-aware collaborative storage and programming for mobile users

Since people generate and access most digital content from mobile devices, novel innovative mobile apps and services are possible. Most people are interested in sharing this content with communities defined by friendship, similar interests, or geography in exchange for valuable services from these innovative apps. At the same time, they want to own and control their content. Collaborative mobile computing is an ideal choice for this situation. However, due to the distributed nature of this computing environment and the limited resources on mobile devices, maintaining content availability and storage fairness as well as providing efficient programming frameworks are challenging. This dissertation explores several techniques to improve these shortcomings of collaborative mobile computing platforms. First, it proposes a medley of three techniques into one system, MobiStore, that offers content availability in mobile peer-to-peer networks: topology maintenance with robust connectivity, structural reorientation based on the current state of the network, and gossip-based hierarchical updates. Experimental results showed that MobiStore outperforms a state-of-the-art comparison system in terms of content availability and resource usage fairness. Next, the dissertation explores the usage of social relationship properties (i.e., network centrality) to improve the fairness of resource allocation for collaborative computing in peer-to-peer online social networks. The challenge is how to provide fairness in content replication for P2P-OSN, given that the peers in these networks exchange information only with one-hop neighbors. The proposed solution provides fairness by selecting the peers to replicate content based on their potential to introduce the storage skewness, which is determined from their structural properties in the network. The proposed solution, Philia, achieves higher content availability and storage fairness than several comparison systems. The dissertation concludes with a high-level distributed programming model, which efficiently uses computing resources on a cloud-assisted, collaborative mobile computing platform. This platform pairs mobile devices with virtual machines (VMs) in the cloud for increased execution performance and availability. On such a platform, two important challenges arise: first, pairing the two computing entities into a seamless computation, communication, and storage unit; and second, using the computing resources in a cost-effective way. This dissertation proposes Moitree, a distributed programming model and middleware that translates high-level programming constructs into events and provides the illusion of a single computing entity over the mobile-VM pairs. From programmers’ viewpoint, the Moitree API models user collaborations into dynamic groups formed over location, time, or social hierarchies. Experimental results from a prototype implementation show that Moitree is scalable, suitable for real-time apps, and can improve the performance of collaborating apps regarding latency and energy consumption

Advancing Cancer Systems Biology: Introducing the Center for the Development of a Virtual Tumor, CViT

Integrative cancer biology research relies on a variety of data-driven computational modeling and simulation methods and techniques geared towards gaining new insights into the complexity of biological processes that are of critical importance for cancer research. These include the dynamics of gene-protein interaction networks, the percolation of sub-cellular perturbations across scales and the impact they may have on tumorigenesis in both experiments and clinics. Such innovative ‘systems’ research will greatly benefit from enabling Information Technology that is currently under development, including an online collaborative environment, a Semantic Web based computing platform that hosts data and model repositories as well as high-performance computing access. Here, we present one of the National Cancer Institute’s recently established Integrative Cancer Biology Programs, i.e. the Center for the Development of a Virtual Tumor, CViT, which is charged with building a cancer modeling community, developing the aforementioned enabling technologies and fostering multi-scale cancer modeling and simulation

Advancing Cancer Systems Biology: Introducing the Center for the Development of a Virtual Tumor, CViT

Integrative cancer biology research relies on a variety of data-driven computational modeling and simulation methods and techniques geared towards gaining new insights into the complexity of biological processes that are of critical importance for cancer research. These include the dynamics of gene-protein interaction networks, the percolation of sub-cellular perturbations across scales and the impact they may have on tumorigenesis in both experiments and clinics. Such innovative ‘systems’ research will greatly benefit from enabling Information Technology that is currently under development, including an online collaborative environment, a Semantic Web based computing platform that hosts data and model repositories as well as high-performance computing access. Here, we present one of the National Cancer Institute’s recently established Integrative Cancer Biology Programs, i.e. the Center for the Development of a Virtual Tumor, CViT, which is charged with building a cancer modeling community, developing the aforementioned enabling technologies and fostering multi-scale cancer modeling and simulation

High Throughput Protein Similarity Searches in the LIBI Grid Problem Solving Environment

Bioinformatics applications are naturally distributed, due to distribution of involved data sets, experimental data and biological databases. They require high computing power, owing to the large size of data sets and the complexity of basic computations, may access heterogeneous data, where heterogeneity is in data format, access policy, distribution, etc., and require a secure infrastructure, because they could access private data owned by different organizations. The Problem Solving Environment (PSE) is an approach and a technology that can fulfil such bioinformatics requirements. The PSE can be used for the definition and composition of complex applications, hiding programming and configuration details to the user that can concentrate only on the specific problem. Moreover, Grids can be used for building geographically distributed collaborative problem solving environments and Grid aware PSEs can search and use dispersed high performance computing, networking, and data resources. In this work, the PSE solution has been chosen as the integration platform of bioinformatics tools and data sources. In particular an experiment of multiple sequence alignment on large scale, supported by the LIBIPSE, is presented

Enabling collaborative numerical modeling in earth sciences using knowledge infrastructure

Knowledge Infrastructure is an intellectual framework for creating, sharing, and distributing knowledge. In this paper, we use Knowledge Infrastructure to address common barriers to entry to numerical modeling in Earth sciences: computational modeling education, replicating published model results, and reusing published models to extend research. We outline six critical functional requirements: 1) workflows designed for new users; 2) a community-supported collaborative web platform; 3) distributed data storage; 4) a software environment; 5) a personalized cloud-based high-performance computing platform; and 6) a standardized open source modeling framework. Our methods meet these functional requirements by providing three interactive computational narratives for hands-on, problem-based research demonstrating how to use Landlab on HydroShare. Landlab is an open-source toolkit for building, coupling, and exploring two-dimensional numerical models. HydroShare is an online collaborative environment for the sharing of data and models. We describe the methods we are using to accelerate knowledge development by providing a suite of modular and interoperable process components that allows students, domain experts, collaborators, researchers, and sponsors to learn by exploring shared data and modeling resources. The system is designed to support uses on the continuum from fully-developed modeling applications to prototyping research software tools