Representation Learning with Autoencoders for Electronic Health Records: A Comparative Study

Increasing volume of Electronic Health Records (EHR) in recent years provides great opportunities for data scientists to collaborate on different aspects of healthcare research by applying advanced analytics to these EHR clinical data. A key requirement however is obtaining meaningful insights from high dimensional, sparse and complex clinical data. Data science approaches typically address this challenge by performing feature learning in order to build more reliable and informative feature representations from clinical data followed by supervised learning. In this paper, we propose a predictive modeling approach based on deep learning based feature representations and word embedding techniques. Our method uses different deep architectures (stacked sparse autoencoders, deep belief network, adversarial autoencoders and variational autoencoders) for feature representation in higher-level abstraction to obtain effective and robust features from EHRs, and then build prediction models on top of them. Our approach is particularly useful when the unlabeled data is abundant whereas labeled data is scarce. We investigate the performance of representation learning through a supervised learning approach. Our focus is to present a comparative study to evaluate the performance of different deep architectures through supervised learning and provide insights in the choice of deep feature representation techniques. Our experiments demonstrate that for small data sets, stacked sparse autoencoder demonstrates a superior generality performance in prediction due to sparsity regularization whereas variational autoencoders outperform the competing approaches for large data sets due to its capability of learning the representation distribution

DeepSat - A Learning framework for Satellite Imagery

Satellite image classification is a challenging problem that lies at the crossroads of remote sensing, computer vision, and machine learning. Due to the high variability inherent in satellite data, most of the current object classification approaches are not suitable for handling satellite datasets. The progress of satellite image analytics has also been inhibited by the lack of a single labeled high-resolution dataset with multiple class labels. The contributions of this paper are twofold - (1) first, we present two new satellite datasets called SAT-4 and SAT-6, and (2) then, we propose a classification framework that extracts features from an input image, normalizes them and feeds the normalized feature vectors to a Deep Belief Network for classification. On the SAT-4 dataset, our best network produces a classification accuracy of 97.95% and outperforms three state-of-the-art object recognition algorithms, namely - Deep Belief Networks, Convolutional Neural Networks and Stacked Denoising Autoencoders by ~11%. On SAT-6, it produces a classification accuracy of 93.9% and outperforms the other algorithms by ~15%. Comparative studies with a Random Forest classifier show the advantage of an unsupervised learning approach over traditional supervised learning techniques. A statistical analysis based on Distribution Separability Criterion and Intrinsic Dimensionality Estimation substantiates the effectiveness of our approach in learning better representations for satellite imagery.Comment: Paper was accepted at ACM SIGSPATIAL 201

Semi-supervised Deep Reinforcement Learning in Support of IoT and Smart City Services

Smart services are an important element of the smart cities and the Internet of Things (IoT) ecosystems where the intelligence behind the services is obtained and improved through the sensory data. Providing a large amount of training data is not always feasible; therefore, we need to consider alternative ways that incorporate unlabeled data as well. In recent years, Deep reinforcement learning (DRL) has gained great success in several application domains. It is an applicable method for IoT and smart city scenarios where auto-generated data can be partially labeled by users' feedback for training purposes. In this paper, we propose a semi-supervised deep reinforcement learning model that fits smart city applications as it consumes both labeled and unlabeled data to improve the performance and accuracy of the learning agent. The model utilizes Variational Autoencoders (VAE) as the inference engine for generalizing optimal policies. To the best of our knowledge, the proposed model is the first investigation that extends deep reinforcement learning to the semi-supervised paradigm. As a case study of smart city applications, we focus on smart buildings and apply the proposed model to the problem of indoor localization based on BLE signal strength. Indoor localization is the main component of smart city services since people spend significant time in indoor environments. Our model learns the best action policies that lead to a close estimation of the target locations with an improvement of 23% in terms of distance to the target and at least 67% more received rewards compared to the supervised DRL model.Comment: 11 pages, 7 figures. Accepted for publication in IEEE Internet of Things Journa

Face Clustering: Representation and Pairwise Constraints

Clustering face images according to their identity has two important applications: (i) grouping a collection of face images when no external labels are associated with images, and (ii) indexing for efficient large scale face retrieval. The clustering problem is composed of two key parts: face representation and choice of similarity for grouping faces. We first propose a representation based on ResNet, which has been shown to perform very well in image classification problems. Given this representation, we design a clustering algorithm, Conditional Pairwise Clustering (ConPaC), which directly estimates the adjacency matrix only based on the similarity between face images. This allows a dynamic selection of number of clusters and retains pairwise similarity between faces. ConPaC formulates the clustering problem as a Conditional Random Field (CRF) model and uses Loopy Belief Propagation to find an approximate solution for maximizing the posterior probability of the adjacency matrix. Experimental results on two benchmark face datasets (LFW and IJB-B) show that ConPaC outperforms well known clustering algorithms such as k-means, spectral clustering and approximate rank-order. Additionally, our algorithm can naturally incorporate pairwise constraints to obtain a semi-supervised version that leads to improved clustering performance. We also propose an k-NN variant of ConPaC, which has a linear time complexity given a k-NN graph, suitable for large datasets.Comment: This second version is the same as TIFS version. Some experiment results are different from v1 because we correct the protocol

Virtual Adversarial Training: A Regularization Method for Supervised and Semi-Supervised Learning

We propose a new regularization method based on virtual adversarial loss: a new measure of local smoothness of the conditional label distribution given input. Virtual adversarial loss is defined as the robustness of the conditional label distribution around each input data point against local perturbation. Unlike adversarial training, our method defines the adversarial direction without label information and is hence applicable to semi-supervised learning. Because the directions in which we smooth the model are only "virtually" adversarial, we call our method virtual adversarial training (VAT). The computational cost of VAT is relatively low. For neural networks, the approximated gradient of virtual adversarial loss can be computed with no more than two pairs of forward- and back-propagations. In our experiments, we applied VAT to supervised and semi-supervised learning tasks on multiple benchmark datasets. With a simple enhancement of the algorithm based on the entropy minimization principle, our VAT achieves state-of-the-art performance for semi-supervised learning tasks on SVHN and CIFAR-10.Comment: To be appeared in IEEE Transactions on Pattern Analysis and Machine Intelligenc

Winner-Take-All Autoencoders

In this paper, we propose a winner-take-all method for learning hierarchical sparse representations in an unsupervised fashion. We first introduce fully-connected winner-take-all autoencoders which use mini-batch statistics to directly enforce a lifetime sparsity in the activations of the hidden units. We then propose the convolutional winner-take-all autoencoder which combines the benefits of convolutional architectures and autoencoders for learning shift-invariant sparse representations. We describe a way to train convolutional autoencoders layer by layer, where in addition to lifetime sparsity, a spatial sparsity within each feature map is achieved using winner-take-all activation functions. We will show that winner-take-all autoencoders can be used to to learn deep sparse representations from the MNIST, CIFAR-10, ImageNet, Street View House Numbers and Toronto Face datasets, and achieve competitive classification performance

Neural Simpletrons - Minimalistic Directed Generative Networks for Learning with Few Labels

Classifiers for the semi-supervised setting often combine strong supervised models with additional learning objectives to make use of unlabeled data. This results in powerful though very complex models that are hard to train and that demand additional labels for optimal parameter tuning, which are often not given when labeled data is very sparse. We here study a minimalistic multi-layer generative neural network for semi-supervised learning in a form and setting as similar to standard discriminative networks as possible. Based on normalized Poisson mixtures, we derive compact and local learning and neural activation rules. Learning and inference in the network can be scaled using standard deep learning tools for parallelized GPU implementation. With the single objective of likelihood optimization, both labeled and unlabeled data are naturally incorporated into learning. Empirical evaluations on standard benchmarks show, that for datasets with few labels the derived minimalistic network improves on all classical deep learning approaches and is competitive with their recent variants without the need of additional labels for parameter tuning. Furthermore, we find that the studied network is the best performing monolithic (`non-hybrid') system for few labels, and that it can be applied in the limit of very few labels, where no other system has been reported to operate so far

Multi-velocity neural networks for gesture recognition in videos

We present a new action recognition deep neural network which adaptively learns the best action velocities in addition to the classification. While deep neural networks have reached maturity for image understanding tasks, we are still exploring network topologies and features to handle the richer environment of video clips. Here, we tackle the problem of multiple velocities in action recognition, and provide state-of-the-art results for gesture recognition, on known and new collected datasets. We further provide the training steps for our semi-supervised network, suited to learn from huge unlabeled datasets with only a fraction of labeled examples

Machine learning based hyperspectral image analysis: A survey

Hyperspectral sensors enable the study of the chemical properties of scene materials remotely for the purpose of identification, detection, and chemical composition analysis of objects in the environment. Hence, hyperspectral images captured from earth observing satellites and aircraft have been increasingly important in agriculture, environmental monitoring, urban planning, mining, and defense. Machine learning algorithms due to their outstanding predictive power have become a key tool for modern hyperspectral image analysis. Therefore, a solid understanding of machine learning techniques have become essential for remote sensing researchers and practitioners. This paper reviews and compares recent machine learning-based hyperspectral image analysis methods published in literature. We organize the methods by the image analysis task and by the type of machine learning algorithm, and present a two-way mapping between the image analysis tasks and the types of machine learning algorithms that can be applied to them. The paper is comprehensive in coverage of both hyperspectral image analysis tasks and machine learning algorithms. The image analysis tasks considered are land cover classification, target detection, unmixing, and physical parameter estimation. The machine learning algorithms covered are Gaussian models, linear regression, logistic regression, support vector machines, Gaussian mixture model, latent linear models, sparse linear models, Gaussian mixture models, ensemble learning, directed graphical models, undirected graphical models, clustering, Gaussian processes, Dirichlet processes, and deep learning. We also discuss the open challenges in the field of hyperspectral image analysis and explore possible future directions

Deep video gesture recognition using illumination invariants

In this paper we present architectures based on deep neural nets for gesture recognition in videos, which are invariant to local scaling. We amalgamate autoencoder and predictor architectures using an adaptive weighting scheme coping with a reduced size labeled dataset, while enriching our models from enormous unlabeled sets. We further improve robustness to lighting conditions by introducing a new adaptive filer based on temporal local scale normalization. We provide superior results over known methods, including recent reported approaches based on neural nets