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Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group

By Timothy R Schmidt, Edgar J Scott and David W Dyer
Topics: Research Article
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:3171730
Provided by: PubMed Central

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  1. (2002). A phylogenomic study of the general stress response sigma factor sigmaB of Bacillus subtilis and its regulatory proteins.
  2. (1995). A positive regulatory gene, pvdS, for expression of pyoverdin biosynthetic genes in Pseudomonas aeruginosa PAO. Mol Gen Genet
  3. (2008). A: The genetically remote pathogenic strain NVH391-98 of the Bacillus cereus group is representative of a cluster of thermophilic strains. Appl Environ Microbiol
  4. (2008). al: Extending the Bacillus cereus group genomics to putative food-borne pathogens of different toxicity. Chem Biol Interact
  5. (2009). al: The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res
  6. (2005). Alternative sigma factors and their roles in bacterial virulence. Microbiol Mol Biol Rev
  7. (2006). Aroian RV: A purified Bacillus thuringiensis crystal protein with therapeutic activity against the hookworm parasite Ancylostoma ceylanicum. Proc Natl Acad Sci USA
  8. (2003). Aroian RV: Bacillus thuringiensis crystal proteins that target nematodes. Proc Natl Acad Sci USA
  9. (2002). Bacillus anthracis genetics and virulence gene regulation. Curr Top Microbiol Immunol
  10. Bacillus anthracis genome organization in light of whole transcriptome sequencing.
  11. (2009). Bacillus anthracis physiology and genetics. Mol Aspects Med
  12. Bacillus pseudomycoides sp.
  13. (2006). Bacterial regulatory networks are extremely flexible in evolution. Nucleic Acids Res
  14. (2008). Bextine BR: Molecular identification of hemolymphassociated symbiotic bacteria in red imported fire ant larvae. Curr Microbiol
  15. (1992). CA: The sigma 70 family: sequence conservation and evolutionary relationships.
  16. (2008). Contreras-Moreira B: The role of DNA-binding specificity in the evolution of bacterial regulatory networks.
  17. (2009). Cote JC: Bacillus thuringiensis Serovars bolivia, vazensis and navarrensis Meet the Description of Bacillus weihenstephanensis.
  18. (2003). Cote JC: Phylogenetic relationships between Bacillus species and related genera inferred from comparison of 3’ end 16S rDNA and 5’ end 16S-23S ITS nucleotide sequences.
  19. (2006). Ellar DJ: Discovery of Bacillus thuringiensis virulence genes using signature-tagged mutagenesis in an insect model of septicaemia. Curr Microbiol
  20. (2005). et al: Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis.
  21. (2001). et al: Massive gene decay in the leprosy bacillus. Nature
  22. (2006). et al: Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis.
  23. (2008). Evidence of complex transcriptional, translational, and posttranslational regulation of the extracytoplasmic function sigma factor sigmaE in Mycobacterium tuberculosis.
  24. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach.
  25. (2001). Fouet A: The incompatibility between the PlcR- and AtxA-controlled regulons may have selected a nonsense mutation in Bacillus anthracis. Mol Microbiol
  26. (2008). Granum PE: From soil to gut: Bacillus cereus and its food poisoning toxins. FEMS Microbiol Rev
  27. (2003). Gross CA: Multiple sigma subunits and the partitioning of bacterial transcription space. Annu Rev Microbiol
  28. (2007). H: Molecular identification of Exiguobacterium acetylicum as the aetiological agent of bacteraemia.
  29. (2003). Helmann JD: The sigma70 family of sigma factors.
  30. (2000). Kolsto AB: Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis–one species on the basis of genetic evidence. Appl Environ Microbiol
  31. Kolsto AB: Extended and global phylogenetic view of the Bacillus cereus group population by combination of MLST, AFLP, and MLEE genotyping data.
  32. (2004). Kolsto AB: Multilocus sequence typing scheme for bacteria of the Bacillus cereus group. Appl Environ Microbiol
  33. (2005). Lereclus D: Specificity and polymorphism of the PlcR-PapR quorum-sensing system in the Bacillus cereus group.
  34. (1998). Measuring genome evolution.
  35. (2006). MEME: discovering and analyzing DNA and protein sequence motifs.
  36. (1988). MJ: Structure and function of bacterial sigma factors. Annu Rev Biochem
  37. (1981). Morphological alterations of cell wall concomitant with protein release in a protein-producing bacterium, Bacillus brevis 47. J Bacteriol
  38. (2006). MS: The ornibactin biosynthesis and transport genes of Burkholderia cenocepacia are regulated by an extracytoplasmic function sigma factor which is a part of the Fur regulon.
  39. (2009). NH: Comparative transcriptional profiling of Bacillus cereus sensu lato strains during growth in CO2-bicarbonate and aerobic atmospheres. PLoS One
  40. Olmedo-Alvarez G: Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics.
  41. (2002). Perriere G: A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. Genome Res
  42. Phylogeny and molecular taxonomy of the Bacillus subtilis species complex and description of Bacillus subtilis subsp. inaquosorum subsp.
  43. (2002). Roilides E: Brain abscesses resulting from Bacillus cereus and an Aspergillus-like mold. J Pediatr Hematol Oncol
  44. (1998). S: Bacillus weihenstephanensis sp. nov. is a new psychrotolerant species of the Bacillus cereus group.
  45. (2008). Sommer RJ: Isolation of naturally associated bacteria of necromenic Pristionchus nematodes and fitness consequences.
  46. (2003). T: A new staphylococcal sigma factor in the conserved gene cassette: functional significance and implication for the evolutionary processes. Genes Cells
  47. (2002). The extracytoplasmic function (ECF) sigma factors. Adv Microb Physiol
  48. (2006). The forespore line of gene expression in Bacillus subtilis.
  49. (2002). The InhA2 metalloprotease of Bacillus thuringiensis strain 407 is required for pathogenicity in insects infected via the oral route.
  50. (2009). The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family. Mol Microbiol
  51. (1994). TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res
  52. (2007). TM: The alternative sigma factor sigmaH is required for toxin gene expression by Bacillus anthracis.
  53. (2009). W: A Novel extracytoplasmic function (ECF) sigma factor regulates virulence in Pseudomonas aeruginosa. PLoS Pathog
  54. (2000). Watabe K: The Bacillus subtilis yabG gene is transcribed by SigK RNA polymerase during sporulation, and yabG mutant spores have altered coat protein composition.
  55. (2003). Zaharof A: Liver abscess due to Bacillus cereus: a case report. Clin Microbiol Infect