Article thumbnail

Comparative Methods for Association Studies: A Case Study on Metabolite Variation in a Brassica rapa Core Collection

By Dunia Pino Del Carpio, Ram Kumar Basnet, Ric C. H. De Vos, Chris Maliepaard, Maria João Paulo and Guusje Bonnema
Topics: Research Article
Publisher: Public Library of Science
OAI identifier: oai:pubmedcentral.nih.gov:3094343
Provided by: PubMed Central

To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.

Suggested articles

Citations

  1. (2007). A Forest-Based Approach to Identifying Gene and Gene-Gene Interactions.
  2. (2005). A genome-wide tree- and forest-based association analysis of comorbidity of alcoholism and smoking.
  3. (2007). A MixedModel Approach to Association Mapping Using Pedigree Information With an Illustration of Resistance to Phytophthora infestans in Potato.
  4. (2009). A Random Forest approach to the detection of epistatic interactions in case-control studies.
  5. (2006). A unified mixed-model method for association mapping that accounts for multiple levels of relatedness.
  6. (2009). Accurate Inference of Subtle Population Structure (and Other Genetic Discontinuities) Using Principal Coordinates.
  7. (1995). AFLP: a new technique for DNA fingerprinting.
  8. (2006). Association Analysis as a Strategy for Improvement of Quantitative Traits in Plants.
  9. (2007). Association mapping of leaf traits, flowering time, and phytate content in Brassica rapa.
  10. (2011). Association mapping of quantitative resistance for Leptosphaeria maculans in oilseed rape.(Brassica napus L.).
  11. (2007). Association mapping of yield and its components in rice cultivars.
  12. (1995). Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing.
  13. (2001). Dwarf8 polymorphisms associate with variation in flowering time.
  14. (2003). Effects of Cultivation Conditions on Folate Production by Lactic Acid Bacteria.
  15. (1996). Estimators for pairwise relatedness and individual inbreeding coefficients.
  16. (2005). Genetic relationships within Brassica rapa as inferred from AFLP fingerprints.
  17. (2005). Genome-Wide Association Mapping in Arabidopsis Identifies Previously Known Flowering Time and Pathogen Resistance Genes.
  18. (2010). Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.
  19. (2010). Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping.
  20. (2003). Inference of Population Structure U s i n gM u l t i l o c u sG e n o t y p eD a t a :L i n k e dL o c ia n dC o r r e l a t e dA l l e l e Frequencies.
  21. (2007). Inference of population structure using multilocus genotype data: dominant markers and null alleles.
  22. (2000). Inference of Population Structure Using Multilocus Genotype Data.
  23. (2006). Linkage Disequilibrium Mapping of Morphological, Resistance, and Other Agronomically Relevant Traits in Modern Spring Barley Cultivars.
  24. (2005). Molecular Population Genetics and the Search for Adaptive Evolution in Plants. Molecular biology and evolution 22:
  25. (1998). NTSYS-pc: Numerical Taxonomy and Multivariate Analysis System, Version 3.2. 1st Edn., Exeter Software,
  26. (2004). One potato, two potato: haplotype association mapping in autotetraploids.
  27. (2006). Population Structure and Eigenanalysis.
  28. (2006). Principal components analysis corrects for stratification in genome-wide association studies.
  29. (2001). Random Forest.
  30. (2004). Screening large-scale association study data: exploiting interactions using Random Forest.
  31. (2002). SPAGeDi: a versatile computer program to analyze spatial genetic structure at the individual or population levels.
  32. (2001). Structure of linkage disequilibrium and phenotypic associations in the maize genome.
  33. (2006). The ABC’s of comparative genomics in the Brassicaceae: building blocks of crucifer genomes.
  34. (2005). The lighthyperresponsive high pigment-2dg mutation of tomato: alterations in the fruit metabolome.
  35. (2011). The patterns of population differentiation in a Brassica rapa core collection.