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Evolutionary history of the iroquois/Irx genes in metazoans

By Pierre Kerner, Aissam Ikmi, Dario Coen and Michel Vervoort
Topics: Research Article
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:2674049
Provided by: PubMed Central
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    Citations

    1. (2001). A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol
    2. (2001). A: Comparative genomics provides evidence for an ancient genome duplication event in fish.
    3. (2006). A: Mohawk is a novel homeobox gene expressed in the developing mouse embryo. Dev Dyn
    4. (1997). Analysis of TALE superclass homeobox genes
    5. (2006). Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified.
    6. (2007). BG: Irxl1, a divergent Iroquois homeobox family transcription factor gene. Gene Expr Patterns
    7. (1997). BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol
    8. (2003). Blaxter ML: Hox Gene Loss during Dynamic Evolution of the Nematode Cluster. Curr Biol
    9. (2008). BM: Genesis and expansion of metazoan transcription factor gene classes. Mol Biol Evol
    10. (2008). Broad phylogenomic sampling improves resolution of the animal tree of life. Nature
    11. (2007). Bürglin TR: Comprehensive analysis of animal TALE homeobox genes: new conserved motifs and cases of accelerated evolution.
    12. (2008). Convergent evolution of clustering of Iroquois homeobox genes across metazoans. Mol Biol Evol
    13. (2004). de la Calle-Mustienes E, Gómez-Skarmeta JL, Allende ML: The Irx gene family in zebrafish: genomic structure, evolution and initial characterization of irx5b. Dev Genes Evol
    14. (2008). DE: The Urbilaterian Super-Hox cluster. Trends Genet
    15. FlyBase: a database for Drosophila genetics and molecular biology [http://flybase.org/]
    16. (2003). Gascuel O: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol
    17. (2001). Gómez-Skarmeta JL: The Iroquois family of genes: from body building to neural patterning. Development
    18. (2000). Gruss P: Identification of a novel mouse Iroquois homeobox gene, Irx5, and chromosomal localisation of all members of the mouse Iroquois gene family. Dev Dyn
    19. (2000). Guigo R: GeneID in Drosophila. Genome Res
    20. (2003). Huelsenbeck JP: MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics
    21. (2002). Iroquois genes: genomic organization and function in vertebrate neural development. Curr Opin Genet Dev
    22. Joint genome institute genome portal [ h t t p : /
    23. (2006). Lercher MJ: Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects. Genome Res
    24. (1997). Lipman DJ: Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res
    25. (2003). Müller WE: Expression of one sponge Iroquois homeobox gene in primmorphs from Suberites domuncula during canal formation. Evol Dev
    26. (1998). PAUP: Phylogenetic Analysis Using Parsimony (and Other Methods), Version 4.
    27. (1997). Prediction of complete gene structures in human genomic DNA.
    28. (2001). Ronquist F: MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics
    29. (2004). Rüther U: Organization of Iroquois genes in fish. Dev Genes Evol
    30. (2000). Rüther U: Organization of mouse Iroquois homeobox genes in two clusters suggests a conserved regulation and function in vertebrate development. Genome Res
    31. (2003). Satou Y: A genomewide survey of developmentally relevant genes in Ciona intestinalis. II. Genes for homeobox transcription factors. Dev Genes Evol
    32. (1996). SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny.
    33. The Ensembl Genome Browser
    34. The Genome Sequencing center –
    35. The Human Genome Sequencing Center, Baylor College of Medicine [http://www.hgsc.bcm.tmc.edu/]
    36. (2000). The new animal phylogeny: reliability and implications.
    37. (2007). The rise and fall of Hox gene clusters. Development
    38. (1998). Thomas WK: A molecular evolutionary framework for the phylum Nematoda. Nature
    39. (1994). TJ: CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res
    40. (2006). Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature

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