Skip to main content
Article thumbnail
Location of Repository

Episodic Evolution and Adaptation of Chloroplast Genomes in Ancestral Grasses

By Bojian Zhong, Takahiro Yonezawa, Yang Zhong and Masami Hasegawa
Topics: Research Article
Publisher: Public Library of Science
OAI identifier:
Provided by: PubMed Central
Download PDF:
Sorry, we are unable to provide the full text but you may find it at the following location(s):
  • http://www.pubmedcentral.nih.g... (external link)
  • Suggested articles


    1. (1994). A codon-based model of nucleotide substitution for protein-coding DNA sequences.
    2. (2000). A compound Poisson process for relaxing the molecular clock.
    3. (2007). A general comparison of relaxed molecular clock models.
    4. (1994). A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.
    5. (1997). A nonparametric approach to estimating divergence times in the absence of rate constancy.
    6. (2007). Analysis of 81 genes from 64 plastid genomes resolves relationships in Episodic Grass Evolution
    7. (2005). Bayes empirical Bayes inference of amino acids sites under positive selection.
    8. (2006). Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds.
    9. (2003). Bayesian models of episodic evolution support a late Precambrian explosive diversification of the Metazoa.
    10. (2005). Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution.
    11. (1995). Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing.
    12. (2006). Computational Molecular Evolution.
    13. (1989). Date of the monocot-dicot divergence estimated from chloroplast chloroplast DNA sequence data.
    14. (2004). Dating the monocot–dicot divergence and the origin of core eudicots using whole chloroplast genomes.
    15. (2004). Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context.
    16. (1998). Estimating the rate of evolution of the rate of molecular evolution.
    17. (2005). Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level.
    18. (2005). Evolutionary history of Poales.
    19. (1992). Extensive variation in evolutionary rate of rbcL gene sequences among seed plants.
    20. (2008). Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions.
    21. (2002). Gondwanan evolution of the grass alliance of families (Poales).
    22. (2005). Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one’s way out of the Felsenstein zone.
    23. (2007). Inferring speciation times under an episodic molecular clock.
    24. (1973). Information theory and an extension of the maximum likelihood principle.
    25. (1997). Interlocus comparisons of the nucleotide substitution process in the chloroplast genome.
    26. (2004). Molecular evidence on plant divergence times.
    27. (2007). PAML 4: Phylogenetic Analysis by Maximum Likelihood.
    28. (2001). Performance of a divergence time estimation method under a probabilistic model of rate evolution.
    29. (2006). Rambaut A
    30. (2008). Rates of molecular evolution are linked to life history in flowering plants.
    31. (1992). Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants.
    32. (2001). Retroposon analysis of major ceatcean lineages: The monophyly of toothed whales and the paraphyly of river dolphins.
    33. (2007). Robust time estimation reconciles views of the antiquity of placental mammals.
    34. (2008). Rooting and dating maples (Acer) with an uncorrelated-rates molecular clock: Implications for North American/Asian disjunctions.
    35. (2005). Sahni A
    36. (2000). Statistical methods for detecting molecular adaptation.
    37. (2008). Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages.
    38. (2005). Sues HD
    39. (2008). The age of the grasses and clusters of origins of C4 photosynthesis.
    40. (1995). The fossil history of the monocotyledons. In: R u d a l lP J ,C r i b bP J ,C u t l e rD F ,H u m p h r i e sC J ,e d s .M o n o c o t y l e d o n : Systematics and Evolution. London: Royal Botanic Gardens, Kew.
    41. (1999). The origin of grass-dominated ecosystems.
    42. (2003). Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution.
    43. (2007). Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms.
    44. (2002). Whole chloroplast genome comparison of rice, maize, and wheat: implications for chloroplast gene diversification and phylogeny of cereals.
    45. (2008). Whole-gene positive selection, elevated synonymous substitution rates, duplication, and indel evolution of the chloroplast clpP1 gene.

    To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.