Skip to main content
Article thumbnail
Location of Repository

Improving consensus structure by eliminating averaging artifacts

By Dukka B KC
Topics: Research Article
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:2662860
Provided by: PubMed Central
Download PDF:
Sorry, we are unable to provide the full text but you may find it at the following location(s):
  • http://www.pubmedcentral.nih.g... (external link)
  • Suggested articles

    Citations

    1. (2007). A: Backbone building from quadrilaterals: a fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates.
    2. (2005). Akutsu T: Protein sidechain packing problem: a maximum edge-weight clique algorithmic approach.
    3. (1997). Algorithm for rapid reconstruction of protein backbone from alpha carbon coordinates.
    4. (2007). Analysis of TASSER-based CASP7 protein structure prediction results. Proteins
    5. (2005). CE: RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble. Rna
    6. (2003). Dunbrack RL Jr: A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci
    7. (1953). E: Equation-of-state calculations by fast computing machines.
    8. (1997). EJ: Refinement of macromolecular structures by the maximum-likelihood method.
    9. (2008). Fast procedure for reconstruction of full-atom protein models from reduced representations.
    10. (2001). Finding the needle in a haystack: Educing native folds from ambiguous ab initio protein structure.
    11. (2005). Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models. Proteins
    12. (1998). JW: Distance geometry generates native-like folds for small helical proteins using the consensus distances of predicted protein structures. Protein Sci
    13. (1998). MINUIT Function Minimization and Error Analysis. CERN Program Library Long Writeup
    14. (2004). Pande VS: How does averaging affect protein structure comparison on the ensemble level? Biophys J
    15. (2002). Pande VS: Native-like mean structure in the unfolded ensemble of small proteins.
    16. (2004). Scoring function for automated assessment of protein structure template quality. Proteins
    17. (2004). SPICKER: a clustering approach to identify near-native protein folds.
    18. (2006). Structure modeling of all identified G protein-coupled receptors in the human genome. PLoS Comput Biol
    19. (2005). TASSER: an automated method for the prediction of protein tertiary structures in CASP6. Proteins
    20. (2008). TL: Comparative modelling by restraint-based conformational sampling. BMC structural biology
    21. (1998). What is the probability of a chance prediction of a protein structure with an rmsd of 6 A? Fold Des

    To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.