AbstractMorphometric differences were used to elucidate the stock geographic variations and phylogeography of Macrobrachium nipponense in Taiwan. Eight samples were collected from three estuaries (Tamsui River Estuary [TSE], Kaoping River Estuary [KPE], and Houlung River Estuary [HLE]) and five reservoirs (Shimen Reservoir [SMR], Mingde Reservoir [MDR], Deji Reservoir [DJR], Tsengwen Reservoir [TWR], and Chengqing Lake Reservoir [CLR]). Twelve morphometric measurements were size-standardized by the allometric method and via Cluster Analysis and Canonical Variate Analysis (CVA). Randomisation tests were used to verify the morphometric variation between groups. The results clustered the eight samples into a minimum of three groups. The first group included four reservoir samples (i.e. DJR, MDR, CLR, and TWR); the second included the SMR sample, and the third comprised the remaining estuarine samples (i.e. TSE, HLE, and KPE). Morphometric variation among the three groups was significant for each sex. Significant differences between these three groups may be derived from evolutionary origins, geographic events or environmental adaption which was discussed in the paper. The difference between multivariate allometric coefficients in both sexes and sites were also tested based on the eight group data sets, and the result showed that the difference between sexes was significant
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