Location of Repository

Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region

By Martin Kircher, Christoph Bock and Martina Paulsen
Topics: Research Article
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:2500034
Provided by: PubMed Central
Download PDF:
Sorry, we are unable to provide the full text but you may find it at the following location(s):
  • http://www.pubmedcentral.nih.g... (external link)
  • Suggested articles



    1. (2004). A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain. Genome research
    2. (2006). A: Denoising feedback loops by thresholding – a new role for microRNAs. Genes & development
    3. (2006). AG: A guide through present computational approaches for the identification of mammalian microRNA targets. Nature methods
    4. (2004). Bioconductor: open software development for computational biology and bioinformatics. Genome biology
    5. (2003). Burge CB: Prediction of mammalian microRNA targets. Cell
    6. (2005). Charlier C: RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus. Curr Biol
    7. (2005). Cohen SM: Principles of microRNA-target recognition. PLoS biology
    8. (2005). Combinatorial microRNA target predictions. Nature genetics
    9. (2006). Core Team: R: A Language and Environment for Statistical Computing.
    10. (2005). De Micheli G: Prediction of regulatory modules comprising microRNAs and target genes. Bioinformatics (Oxford,
    11. (2005). DP: Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell
    12. (2005). DP: Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA
    13. Enright AJ: miRBase: microRNA sequences, targets and gene nomenclature.
    14. (2001). Epigenetic reprogramming in mammalian development. Science
    15. (2008). evolution, and biological role of miRNA cluster in DLK-DIO3 genomic region in placental mammals. Mol Biol Evol
    16. (2006). Evolutionary conservation of expression profiles between human and mouse orthologous genes. Mol Biol Evol
    17. (1977). Exploratory Data Analysis.
    18. (2004). Fast and effective prediction of microRNA/target duplexes. RNA
    19. (2006). Ferguson-Smith AC: Analysis of mouse conceptuses with uniparental duplication/deficiency for distal chromosome 12: comparison with chromosome 12 uniparental disomy and implications for genomic imprinting. Cytogenet Genome Res
    20. (2003). Ferguson-Smith AC: Asymmetric regulation of imprinting on the maternal and paternal chromosomes at the Dlk1-Gtl2 imprinted cluster on mouse chromosome 12. Nature genetics
    21. (2000). Ferguson-Smith AC: Parental origin-specific developmental defects in mice with uniparental disomy for chromosome 12. Development (Cambridge,
    22. (2000). Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature genetics
    23. (2005). Global transcriptome analysis of the C57BL/6J mouse testis by SAGE: evidence for nonrandom gene order. BMC genomics
    24. (2006). Greenberg ME: A brain-specific microRNA regulates dendritic spine development. Nature
    25. (2005). HG: A census of mammalian imprinting. Trends Genet
    26. (2006). High-resolution map and imprinting analysis of the Gtl2-Dnchc1 domain on mouse chromosome 12. Genomics
    27. (2005). Identification of clustered microRNAs using an ab initio prediction method. BMC bioinformatics
    28. (2003). Imprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like gene. Nature genetics
    29. (2002). Initial sequencing and comparative analysis of the mouse genome. Nature
    30. (2003). JD: Multiple sequence alignment with the Clustal series of programs. Nucleic acids research
    31. (2006). Le Digarcher A, et al.: Zac1 regulates an imprinted gene network critically involved in the control of embryonic growth. Dev Cell
    32. (2000). LG: Search for imprinted regions on chromosome 14: comparison of maternal and paternal UPD cases with cases of chromosome 14 deletion. American journal of medical genetics
    33. (2005). Meiri E, et al.: Identification of hundreds of conserved and nonconserved human microRNAs. Nature genetics
    34. (2005). MicroRNA Target Practice. The Scientist
    35. (2006). microRNA target predictions in animals. Nature genetics
    36. (2005). MicroRNAdependent localization of targeted mRNAs to mammalian P-bodies. Nature cell biology
    37. (2004). MicroRNAs: genomics, biogenesis, mechanism, and function. Cell
    38. (2007). Nishikura K: Redirection of silencing targets by adenosine-toinosine editing of miRNAs. Science
    39. (2006). Oakey RJ: Genomic imprinting in mammals: emerging themes and established theories. PLoS genetics
    40. (2006). PF: The expansion of the metazoan microRNA repertoire. BMC genomics
    41. (2005). Plasterk RH: MicroRNA function in animal development. FEBS letters
    42. (2005). Prediction and validation of microRNAs and their targets. FEBS letters
    43. (2004). Prilliman KR: RNA interference: the molecular immune system. Journal of molecular histology
    44. (2005). Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res
    45. (2006). Rigoutsos I: A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes. Cell
    46. (2005). RNAi as a bioinformatics consumer. Briefings in bioinformatics
    47. (2006). Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes.
    48. (2005). SM: Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution. Cell
    49. (2006). Small non-coding RNAs and genomic imprinting. Cytogenet Genome Res
    50. (2001). Sonnhammer EL: Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. Journal of molecular biology
    51. (2003). Speed TP: Summaries of Affymetrix GeneChip probe level data. Nucleic acids research
    52. (2007). T: Epigenetic regulation of microRNA-370 by interleukin-6 in malignant human cholangiocytes. Oncogene
    53. (2006). T: Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics
    54. (2003). The callipyge locus: evidence for the trans interaction of reciprocally imprinted genes. Trends Genet
    55. (2004). The evolutionary dynamics of eukaryotic gene order. Nature reviews
    56. (2008). the SAVOIR consortium (Dunhamn I. RMB, Ferguson-Smith A.C.), et al.: The evolution of the DLK1-DIO3 imprinted domain in mammals. PLoS biology
    57. (2006). Torvik VI: Alu elements within human mRNAs are probable microRNA targets. Trends Genet
    58. (2005). Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammals. Gene
    59. (2002). Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics
    60. WJ: The UCSC Table Browser data retrieval tool.

    To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.