Skip to main content
Article thumbnail
Location of Repository

Significance analysis of microarray for relative quantitation of LC/MS data in proteomics

By Bryan AP Roxas and Qingbo Li
Topics: Methodology Article
Publisher: BioMed Central
OAI identifier:
Provided by: PubMed Central

Suggested articles


  1. (2004). 3rd: A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal Chem
  2. (2005). A: Assessing reproducibility of a protein dynamics study using in vivo labeling and liquid chromatography tandem mass spectrometry. Anal Chem
  3. (2006). Aerobic and photosynthetic cell cultures.
  4. (2007). BL: A new algorithm using cross-assignment for label-free quantitation with LC-LTQ-FT MS.
  5. (2006). BL: New algorithm for 15N/14N quantitation with LC-ESI-MS using an LTQ-FT mass spectrometer.
  6. (2006). Comparison of spectral counting and metabolic stable isotope labeling for use with quantitative microbial proteomics. Analyst
  7. (2005). Emili A: Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry. Mol Cell Proteomics
  8. (2007). Ferry JG: Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol.
  9. (2006). Franzblau S: ICAT-based comparative proteomic analysis of non-replicating persistent Mycobacterium tuberculosis. Tuberculosis (Edinb)
  10. (2007). Global and targeted quantitative proteomics for biomarker discovery.
  11. (2006). JA: Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCR. Mol Cell Proteomics
  12. Lipton MS: Application of the accurate mass and time tag approach to the proteome analysis of subcellular fractions obtained from Rhodobacter sphaeroides
  13. (2007). LJ: Simultaneous and exact interval estimates for the contrast of two groups based on an extremely high dimensional variable: application to mass spec data. Bioinformatics
  14. (2006). Paulovich A: Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles.
  15. (2007). RC: Quantitative analysis of complex peptide mixtures using FTMS and differential mass spectrometry.
  16. (2006). RF: Label-free protein quantification using LC-coupled ion trap or FT mass spectrometry: Reproducibility, linearity, and application with complex proteomes.
  17. (2001). Significance analysis of microarrays applied to the ionizing radiation response.
  18. (2006). Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system. Genome Biol
  19. (2007). T: Reproducibility assessment of relative quantitation strategies for LC-MS based proteomics. Anal Chem
  20. (2003). The positive discovery rate: a Bayesian interpretation and the q-value. The Annuals of statistics

To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.