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Parameter optimization in S-system models

By Marco Vilela, I-Chun Chou, Susana Vinga, Ana Tereza R Vasconcelos, Eberhard O Voit and Jonas S Almeida
Topics: Research Article
Publisher: BioMed Central
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Provided by: PubMed Central

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  2. (2007). Almeida JS: Automated smoother for the numerical decoupling of dynamics models.
  3. (1970). Biochemical systems analysis. 3. Dynamic solutions using a power-law approximation.
  4. (1969). Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions.
  5. (1969). Biochemical systems analysis. II. The steadystate solutions for an n-pool system using a power-law approximation.
  6. Computational analysis of biochemical systems : a practical guide for biochemists and molecular biologists. Cambridge ; New York ,
  7. (2004). Control Aspect of Common Interactions Extracted form Inferred Network Candidates of Gene Expression. Genome Informatics
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  9. (2002). Development of system identification technique based on real-coded genetic algorithm. Genome Informatics
  10. (2003). Dynamic modeling of genetic networks using genetic algorithm and Ssystem. Bioinformatics
  11. (2006). EO: Parameter estimation in biochemical systems models with alternating regression. Theor Biol Med Model
  12. (1996). Flux-based estimation of parameters in S-systems. Ecol Modeling
  13. (2006). Gatzke EP: Identification of metabolic system parameters using global optimization methods. Theor Biol Med Model
  14. (2003). Integrated System for Inference of Gene Expression Network. Genome Informatics
  15. (1988). Matrix differential calculus with applications in statistics and econometrics.
  16. (2007). Mendoza E: Parameter estimation using Simulated Annealing for S-system models of biochemical networks. Bioinformatics
  17. (2006). Parameter estimation for stiff equations of biosystems using radial basis function networks.
  18. (2005). Reverse engineering of biochemical equations from time-course data by means of genetic programming. Biosystems
  19. (1996). RL: A pharmacodynamic model for the action of the antibiotic imipenem on Pseudomonas aeruginosa populations in vitro.
  20. (1996). Rules for coupled expression of regulator and effector genes in inducible circuits.
  21. (2007). S-system parameter estimation for noisy metabolic profiles using newton-flow analysis.
  22. (1982). Savageau MA: Power-law approach to modeling biological systems; III. Methods of analysis.
  23. (2007). Sethna JP: Universally sloppy parameter sensitivities in systems biology models. PLoS Comput Biol
  24. (1992). Symmetries of S-systems.
  25. (2006). The intricate side of systems biology.
  26. (2003). Voit EO: Neural-network-based parameter estimation in S-system models of biological networks.
  27. (2005). Wang FS: Evolutionary optimization with data collocation for reverse engineering of biological networks.

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