HER2/neu amplification/overexpression is the only somatic mutation widely considered to be a marker of
disease outcome and response to treatment in breast cancer. Pathologists have made large efforts to achieve
accuracy in characterizing HER2/neu status. The introduction of transtuzumab contributed to development of
additional measures to identify sensitive and resistant subclasses of HER2/neu-positive tumors. In this article,
we describe the latest advances in HER2/neu status diagnostic assessment and the most relevant research
emerging from ‘‘Omics’’ (genomics, epigenetics, transcriptomics, and proteomics) studies on HER2/neu-positive
breast cancer. A large quantity of biomarkers from different studies highlighted HER2/neu-positive specific
proliferation, cell cycle arrest, and apoptosis mechanisms, as well as immunological and metabolic behavior.
Major driver genes of tumor progression have had a candidate status (GRB7, MYC, CCND1, EGFR, etc.), even
though the main role for HER2/neu is largely recognized. Nonetheless, existing omics data and HER2/neupositive
molecular profiles seem to suggest that few proteogenomic alterations in HER2, EGFR, and PI3K
networks could significantly affect the effectiveness of transtuzumab. The systematic search of molecular alterations
in and across these pathways can help to select the most appropriate drug for a given patient based on
in-depth understanding of complexity in tumor biology
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