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RISSC: a novel database for ribosomal 16S–23S RNA genes spacer regions

By Jesús García-Martínez, Ignacio Bescós, Jesús Javier Rodríguez-Sala and Francisco Rodríguez-Valera

Abstract

A novel database, under the acronym RISSC (Ribosomal Intergenic Spacer Sequence Collection), has been created. It compiles more than 1600 entries of edited DNA sequence data from the 16S–23S ribosomal spacers present in most prokaryotes and organelles (e.g. mitochondria and chloroplasts) and is accessible through the Internet (http://ulises.umh.es/RISSC), where systematic searches for specific words can be conducted, as well as BLAST-type sequence searches. Additionally, a characteristic feature of this region, the presence/absence and nature of tRNA genes within the spacer, is included in all the entries, even when not previously indicated in the original database. All these combined features could provide a useful documen­tation tool for studies on evolution, identification, typing and strain characterization, among others

Topics: Article
Publisher: Oxford University Press
Year: 2001
OAI identifier: oai:pubmedcentral.nih.gov:29764
Provided by: PubMed Central
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