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organism gene finders like GENSCAN and GENIE, or to comparative gene finders such as ROSETTA (which separates the steps of alignment and gene finding). We have built a program called SLAM which implements these ideas and can be used to annotate syntenic sequences by finding coding exons and conserved noncoding sequences, or as a global alignment program which takes advantage of the biological features of the sequences to improve the accuracy of the alignments

Year: 2014
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