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A Strongly Connected Components

By Rune Lyngsø

Abstract

1. Find the strongly connected components in the following regulatory network, by running the strongly connected component algorithm in the lecture notes. For each gene, include the finishing time for the corresponding node in your answer, and indicate which gene leads to the discovery of each strongly connected component. This network is a subnetwork of the network presented in [1, Fig. 3], with two regulatory interactions changed to have opposite direction (Zfp219 → Nr5a2 and Dax1 → Nanog) and one interaction removed (Nanog → Oct4)

Year: 2009
OAI identifier: oai:CiteSeerX.psu:10.1.1.186.9426
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