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bestCis extract best (or all) cis-associated eQTL from a multffmgr instance Description Usage

By Vj Carey

Abstract

extract best (or all) cis-associated eQTL from a multffmgr instance bestCis(ffmgr, slranges, radius = 1e+06, ffind = 1, anno, ncores = 10) #allCisP_1sided(ffmgr, slranges, radius = 1e+06, ffind = 1, anno, ncores = 10) Arguments ffmgr slranges radius ffind anno ncores manager object, output of multffCT or diagffCC snp locations RangedData instance number of bases up and down stream to declare cis index into fflist component of manager for eQTL associations cores character atom naming annotation package for resolution of colnames of ffmgr matrix number of cores for mclapply to use Value for bestCis, data frame with genes as rows, rsnum and chisq(df) scores, with df and gene and SNP locations as columns. Author(s

Topics: sms
Year: 2010
OAI identifier: oai:CiteSeerX.psu:10.1.1.178.5446
Provided by: CiteSeerX
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