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Wildfire: distributed, Grid-enabled workflow construction and execution-3

By Francis Tang (61457), Ching Lian Chua (61458), Liang-Yoong Ho (61459), Yun Ping Lim (61460), Praveen Issac (61461) and Arun Krishnan (7979)

Abstract

<p><b>Copyright information:</b></p><p>Taken from "Wildfire: distributed, Grid-enabled workflow construction and execution"</p><p>BMC Bioinformatics 2005;6():69-69.</p><p>Published online 24 Mar 2005</p><p>PMCID:PMC1274263.</p><p>Copyright © 2005 Tang et al; licensee BioMed Central Ltd.</p>pressed genbank files, one for each human chromosome. We decompress (gunzip) the genbank file, extract (exonx) from it all the exons into one fasta file and then break up (dice) this fasta file into 5 smaller fasta files; we do this for each chromosome in parallel. At the same time, we decompress the file of transcripts and use formatdb to format it for use as a BLAST database. Finally, we blast the exons against the transcript database in parallel. Note that components are rendered as rectangles and the bottom half shows a unique numerical identifier; this can be used to distinguish components derived from the same template, e.g. gunzip:2 and gunzip:6

Topics: Uncategorised, wildfire, distributed, gridenabled, workflow, construction
Year: 2011
DOI identifier: 10.6084/m9.figshare.52623.v1
OAI identifier: oai:figshare.com:article/52623
Provided by: FigShare
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