Performance of solar-induced chlorophyll fluorescence in estimating water-use efficiency in a temperate forest

© The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Remote Sensing 10 (2018): 796, doi:10.3390/rs10050796.Water-use efficiency (WUE) is a critical variable describing the interrelationship between carbon uptake and water loss in land ecosystems. Different WUE formulations (WUEs) including intrinsic water use efficiency (WUEi), inherent water use efficiency (IWUE), and underlying water use efficiency (uWUE) have been proposed. Based on continuous measurements of carbon and water fluxes and solar-induced chlorophyll fluorescence (SIF) at a temperate forest, we analyze the correlations between SIF emission and the different WUEs at the canopy level by using linear regression (LR) and Gaussian processes regression (GPR) models. Overall, we find that SIF emission has a good potential to estimate IWUE and uWUE, especially when a combination of different SIF bands and a GPR model is used. At an hourly time step, canopy-level SIF emission can explain as high as 65% and 61% of the variances in IWUE and uWUE. Specifically, we find that (1) a daily time step by averaging hourly values during daytime can enhance the SIF-IWUE correlations, (2) the SIF-IWUE correlations decrease when photosynthetically active radiation and air temperature exceed their optimal biological thresholds, (3) a low Leaf Area Index (LAI) has a negative effect on the SIF-IWUE correlations due to large evaporation fluxes, (4) a high LAI in summer also reduces the SIF-IWUE correlations most likely due to increasing scattering and (re)absorption of the SIF signal, and (5) the observation time during the day has a strong impact on the SIF-IWUE correlations and SIF measurements in the early morning have the lowest power to estimate IWUE due to the large evaporation of dew. This study provides a new way to evaluate the stomatal regulation of plant-gas exchange without complex parameterizations.This research was supported by U.S. Department of Energy Office of Biological and Environmental Research Grant DE-SC0006951, National Science Foundation Grants DBI 959333 and AGS-1005663, and the University of Chicago and the MBL Lillie Research Innovation Award to Jianwu Tang. This study was also supported by the open project grant (LBKF201701) of Key Laboratory of Land Surface Pattern and Simulation, Chinese Academy of Sciences

Comparison of phenology estimated from reflectance-based indices and solar-induced chlorophyll fluorescence (SIF) observations in a temperate forest using GPP-based phenology as the standard

© The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Remote Sensing 10 (2018): 932, doi:10.3390/rs10060932.We assessed the performance of reflectance-based vegetation indices and solar-induced chlorophyll fluorescence (SIF) datasets with various spatial and temporal resolutions in monitoring the Gross Primary Production (GPP)-based phenology in a temperate deciduous forest. The reflectance-based indices include the green chromatic coordinate (GCC), field measured and satellite remotely sensed Normalized Difference Vegetation Index (NDVI); and the SIF datasets include ground-based measurement and satellite-based products. We found that, if negative impacts due to coarse spatial and temporal resolutions are effectively reduced, all these data can serve as good indicators of phenological metrics for spring. However, the autumn phenological metrics derived from all reflectance-based datasets are later than the those derived from ground-based GPP estimates (flux sites). This is because the reflectance-based observations estimate phenology by tracking physiological properties including leaf area index (LAI) and leaf chlorophyll content (Chl), which does not reflect instantaneous changes in phenophase transitions, and thus the estimated fall phenological events may be later than GPP-based phenology. In contrast, we found that SIF has a good potential to track seasonal transition of photosynthetic activities in both spring and fall seasons. The advantage of SIF in estimating the GPP-based phenology lies in its inherent link to photosynthesis activities such that SIF can respond quickly to all factors regulating phenological events. Despite uncertainties in phenological metrics estimated from current spaceborne SIF observations due to their coarse spatial and temporal resolutions, dates in middle spring and autumn—the two most important metrics—can still be reasonably estimated from satellite SIF. Our study reveals that SIF provides a better way to monitor GPP-based phenological metrics.This research was supported by U. S. Department of Energy Office of Biological and Environmental Research Grant DE-SC0006951, National Science Foundation Grants DBI 959333 and AGS-1005663, and the University of Chicago and the MBL Lillie Research Innovation Award to Jianwu Tang and China Scholarship Council No. 201506190095 to Z. Liu. Xiaoliang Lu was also supported by the open project grant (LBKF201701) of Key Laboratory of Land Surface Pattern and Simulation, Chinese Academy of Sciences

Using canopy greenness index to identify leaf ecophysiological traits during the foliar senescence in an oak forest

© The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecosphere 9 (2018): e02337, doi:10.1002/ecs2.2337.Camera‐based observation of forest canopies allows for low‐cost, continuous, high temporal‐spatial resolutions of plant phenology and seasonality of functional traits. In this study, we extracted canopy color index (green chromatic coordinate, Gcc) from the time‐series canopy images provided by a digital camera in a deciduous forest in Massachusetts, USA. We also measured leaf‐level photosynthetic activities and leaf area index (LAI) development in the field during the growing season, and corresponding leaf chlorophyll concentrations in the laboratory. We used the Bayesian change point (BCP) approach to analyze Gcc. Our results showed that (1) the date of starting decline of LAI (DOY 263), defined as the start of senescence, could be mathematically identified from the autumn Gcc pattern by analyzing change points of the Gcc curve, and Gcc is highly correlated with LAI after the first change point when LAI was decreasing (R2 = 0.88, LAI < 2.5 m2/m2); (2) the second change point of Gcc (DOY 289) started a more rapid decline of Gcc when chlorophyll concentration and photosynthesis rates were relatively low (13.4 ± 10.0% and 23.7 ± 13.4% of their maximum values, respectively) and continuously reducing; and (3) the third change point of Gcc (DOY 295) marked the end of growing season, defined by the termination of photosynthetic activities, two weeks earlier than the end of Gcc curve decline. Our results suggested that with the change point analysis, camera‐based phenology observation can effectively quantify the dynamic pattern of the start of senescence (with declining LAI) and the end of senescence (when photosynthetic activities terminated) in the deciduous forest.Priority Academic Program Development of Jiangsu Higher Education Institutions in Discipline of Environmental Science and Engineer in Nanjing Forest University; China Scholarship Council Grant Number: 201506190095; Brown University Seed Funds for International Research Projects on the Environmen

Relationship between leaf physiologic traits and canopy color indices during the leaf expansion period in an oak forest

© The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecosphere 6, no. 12 (2015): 1-9, doi:10.1890/ES14-00452.1.Plant phenology has a significant impact on the forest ecosystem carbon balance. Detecting plant phenology by capturing the time-series canopy images through digital camera has become popular in recent years. However, the relationship between color indices derived from camera images and plant physiological characters are elusive during the growing season in temperate ecosystems. We collected continuous images of forest canopy, leaf size, leaf area index (LAI) and leaf chlorophyll measured by a soil plant analysis development (SPAD) analyzer in a northern subtropical oak forest in China. Our results show that (1) the spring peak of color indices, Gcc (Green Chromatic Coordinates) and ExG (Excess Green), was 18 days earlier than the 90% maximum SPAD value; (2) the 90% maximum SPAD value coincided with the change point of Gcc and ExG immediately after their spring peak; and (3) the spring curves of Gcc and ExG before their peaks were highly synchronous with the expansion of leaf size and the development of LAI value. We suggest it needs to be adjusted if camera-derived Gcc or ExG is used as a proxy of chlorophyll or gross primary productivity, and images observation should be complemented with field phenological and physiological information to interpret the physiological meaning of leaf seasonality.This research was funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions in the Discipline of Environmental Science and Engineering at Nanjing Forest University, Changjiang River Delta Urban Forest Ecosystem Research of CFERN (to H. Hu) and Brown University Seed Funds for International Research Projects on the Environment (to J. Tang)

Potential of solar-induced chlorophyll fluorescence to estimate transpiration in a temperate forest

By utilizing continuous measurements of water fluxes and solar-induced chlorophyll fluorescence (SIF) over the entire growing season, we exploit the potential of broadband SIF in predicting plant transpiration (T) in a temperate forest. After reconstructing the full SIF spectrum from the selected absorption lines and simulations from the SCOPE (Soil Canopy Observation Photochemistry and Energy fluxes) model, linear regression (LR) and Gaussian processes regression (GPR) models are used to analyze the relation between T and combinations of different SIF bands. We find that SIF emissions in the near-infrared spectrum (at 720 nm, 740 nm and 760 nm) are more sensitive to T than SIF emissions in the red spectrum (at 685 nm and 687 nm). While conditions such as light and heat stress decouple the relationship between single-band SIF and T, the combination of different SIF bands allows the retrieval of reliable T estimates even in these conditions. Overall, we find that the use of SIF as a proxy for T yields estimates that are at least as accurate as those from traditional transpiration models such as the Penman-Monteith equation, which are input demanding and complex to apply to in situ and satellite data. Specifically, we find that (1) the SIF-T relationship deteriorates when Photosynthetically Active Radiation (PAR), vapor pressure deficit and air temperature exceed biological optimal thresholds; (2) a high leaf area index exerts a negative impact on the SIF-T correlation due to increasing scattering and (re)absorption of the SIF signal; (3) the SIF-T relationship does not change depending on the observation time during the day; and (4) temporal aggregation to days further enhanced the SIF-T correlations. Altogether, our results provide the first ground based evidence that SIF emission has potential to be a close predictor of plant transpiration, especially when a combination of different SIF bands is considered

Far-Red Chlorophyll Fluorescence Radiance Tracks Photosynthetic Carbon Assimilation Efficiency of Dark Reactions

Solar-induced chlorophyll fluorescence (SIF) observations from space have shown close relationships with terrestrial photosynthesis rates. SIF originates from the light reactions of photosynthesis, whereas carbon fixation takes place during the dark reactions of photosynthesis. Questions remain regarding whether SIF is able to track changes in the efficiency of the dark reactions in photosynthesis. Using concurrent measurements of leaf-scale gas exchange, pulse amplitude-modulated (PAM) fluorescence, and fluorescence spectral radiances, we found that both far-red fluorescence radiances and PAM fluorescence yields responded rapidly to changes in photosynthetic carbon assimilation due to changes in environmental factors or induced stomatal closure under constant light conditions. Uncertainties in outgoing and incoming irradiance mismatch for SIF measurements may very likely obscure the contributions of the dark reactions, thereby causing the inconsistent findings previously reported, which were no change in far-red SIF and PAM fluorescence yields after clear reductions in the photosynthetic carbon assimilation efficiency of dark reactions. Our results confirm that high-quality SIF measurements have the potential to provide insights into the dark reactions of photosynthesis. This study is particularly relevant for better interpreting satellite SIF observations that are obtained under roughly constant overpass times and relatively stable light intensities