He, Fei

Stumpf, Michael P H

English

One of the central tasks in systems biology is to understand how cells regulate their metabolism. Hierarchical regulation analysis is a powerful tool to study this regulation at the metabolic, gene-expression, and signaling levels. It has been widely applied to study steady-state regulation, but analysis of the metabolic dynamics remains challenging because it is difficult to measure time-dependent metabolic flux. Here, we develop a nonparametric method that uses Gaussian processes to accurately infer the dynamics of a metabolic pathway based only on metabolite measurements; from this, we then go on to obtain a dynamical view of the hierarchical regulation processes invoked over time to control the activity in a pathway. Our approach allows us to use hierarchical regulation analysis in a dynamic setting but without the need for explicitly time-dependent flux measurements

Coventry University Pure Portal

Quantifying Dynamic Regulation in Metabolic Pathways with Nonparametric Flux Inference

https://pure.coventry.ac.uk/ws/files/25362385/Binder4.pdf

Quantifying Dynamic Regulation in Metabolic Pathways with Nonparametric Flux Inference

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Coventry University Pure Portal