Comparison between the virtual bond-based PDB structure and top-ranked predicted structures with statistical potentials

Abstract

<p><b>.</b> The loop is a multibranched loop from PDB structure 3CCM. In the figure, the structure shown in brown () and yellow () stands for the PDB structure, the one shown in brown () and pink () represents the minimal-RMSD structure (RMSD = 2.42 Å), and the one shown in brown () and lightgray () represents the predicted structure with lowest potentials (RMSD = 2.87 Å), computed with statistical potentials . The minimal-RMSD structure has the 9-th lowest potential. The atomic structures are illustrated with Pymol software (<a href="http://www.pymol.org/" target="_blank">http://www.pymol.org/</a>).</p