Comparison between the virtual bond-based PDB structure and correctly predicted structure with statistical potentials

Abstract

<p><b>.</b> The loops are (A) a hairpin loop from PDB structure 1IVS and (B) an internal loop from PDB structure 1JJ2, respectively. In both figures, the structures shown in brown () and yellow () stand for the PDB structure, and the ones shown in brown () and purple () represent the correctly predicted structure, which have the lowest potential and the minimal RMSD. The RMSD values are (A) 1.52 Å and (B) 1.96 Å, respectively. The atomic structures are illustrated with Pymol software (<a href="http://www.pymol.org/" target="_blank">http://www.pymol.org/</a>).</p