The spatial gene-gene interaction networks and the analysis of its properties.

Abstract

<p>The results were based on the contact data with reads that were mapped to multiple locations on the genome removed. (<b>A</b>) The gene-gene interaction network of genes residing in chromosome 14 for the CALL-4 cell line. (<b>B</b>) The distribution of node degrees. (<b>C</b>) The histogram of shortest path lengths. (<b>D</b>) The plot of average clustering coefficient against of the degree (the number of neighbors) of a node. (<b>E</b>) The plot of closeness centralities against the degree of a node. (<b>F</b>) The stress distribution. (<b>G</b>) The plot of topological coefficients against the degree of a node. The network and its properties were visualized and analyzed by Cytoscape <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058793#pone.0058793-Shannon1" target="_blank">[32]</a>.</p