Double clustering of the carbohydrate-cleaving families of 8 basidiomycete genomes.

Abstract

<p><b>Top tree:</b> S. com. for <i>Schizophyllum commune</i>; V. vol. for <i>Volvariella volvacea</i>; P. chr. for <i>Phanerochaete chrysosporium</i>; C. cin. for <i>Coprinopsis cinerea</i>; P. pla. for <i>Postia placenta</i>; L. bio. for <i>Laccaria bicolor</i>; C. neo. for <i>Cryptococcus neoformans</i>; U. may. for <i>Ustilago maydis</i>. <b>Left tree:</b> the enzyme families are represented by their class (GH for glycoside hydrolase; PL for polysaccharide lyase; CE for carbohydrate esterase) and family number according to the carbohydrate-active enzyme database <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Cantarel1" target="_blank">[23]</a>. <b>Right side:</b> known substrate of CAZy families. Abundance of the different enzymes within a family is represented by a colour scale from 0 (black) to >20 (red) occurrences per species.</p

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