Genetic variation, population structure and phylogeography in the Northeastern and Southwestern ridges.
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Abstract
<p><i>H<sub>O</sub></i> observed heterozygosity per deme <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0090086#pone.0090086-Nei2" target="_blank">[76]</a>; <i>H<sub>E</sub></i> expected heterozygosity per deme and corrected for sample size <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0090086#pone.0090086-Nei2" target="_blank">[76]</a>; <i>A<sub>R</sub></i> rarefied allelic richness per deme for a sample size of 102 gene copies <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0090086#pone.0090086-Hurlbert1" target="_blank">[57]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0090086#pone.0090086-ElMousadik1" target="_blank">[58]</a>; <i>H<sub>T</sub></i> overall gene diversity per deme <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0090086#pone.0090086-Nei2" target="_blank">[76]</a>; <i>F<sub>IS</sub></i> inbreeding coefficient per deme <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0090086#pone.0090086-Weir2" target="_blank">[59]</a>; <i>F<sub>ST</sub></i> genetic differentiation per deme based on allele identity <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0090086#pone.0090086-Weir2" target="_blank">[59]</a>; <i>R<sub>ST</sub></i> genetic differentiation per deme based on allele size <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0090086#pone.0090086-Slatkin3" target="_blank">[63]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0090086#pone.0090086-Michalakis1" target="_blank">[64]</a>; <i>pR<sub>ST</sub></i> permuted <i>R<sub>ST</sub></i> after allele size permutation test <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0090086#pone.0090086-Hardy2" target="_blank">[65]</a>. Columns 1 to 6 indicate the statistical differences in genetic variation and population structure between populations of the Northeastern ridge and populations of the Southwestern ridge. Columns 7 and 8 indicate the results of the test of phylogeographic patterns corresponding to the statistical differences between <i>R<sub>ST</sub></i> and <i>pR<sub>ST</sub></i> within the Northeastern ridge and within the Southwestern ridge. * P<0.05; ** P<0.01; *** P<0.001. <sup>NS</sup>Non-Significant test.</p
