Throughput benchmarks.

Abstract

<p>We compare throughput of search queries for both Suns and Erebus, defined as query time divided by number of models in the data set. Suns throughput is measured against a locally hosted server and the Erebus throughput data is taken from <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003750#pcbi.1003750-Shirvanyants1" target="_blank">[12]</a>. Detailed query information, including the query size in atoms and the number of matches, is provided in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003750#pcbi.1003750.s003" target="_blank">Table S3</a> and the specific query PDB files are included in the benchmark suite of suns-cmd (<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003750#pcbi.1003750.s006" target="_blank">Software S2</a>).</p