Computational prediction of <i>S</i>-nitrosylation sites from experimentally identified <i>S</i>-nitrosylated proteins in plants using GPS-SNO 1.0, iSNO-PseAAC, iSNO-AAPair, and SNOSite software.

Abstract

<p>Amino acid sequences were downloaded from the most recent version of the <i>Arabidopsis</i> information resource TAIR (TAIR10, <a href="http://www.arabidopsis.org" target="_blank">www.arabidopsis.org</a>) and subjected to the different programs for prediction of S-nitrosylation sites. NPR1, non-expresser of pathogenesis related genes 1; GAPDH, glyceraldehyde 3-phosphate dehydrogenase; SABP3, salicylic acid binding protein 3; TGA1, TGACG motif binding factor; cALD2, cytosolic fructose 1,6-bisphosphate aldolase; TIR1, transport inhibitor response 1; CDC48, cell division cycle 48; AtMYB30, <i>Arabidopsis thaliana</i> MYB transcription factor.</p><p>C in bold, matched cysteine residues, "_" not predicted</p><p>Computational prediction of <i>S</i>-nitrosylation sites from experimentally identified <i>S</i>-nitrosylated proteins in plants using GPS-SNO 1.0, iSNO-PseAAC, iSNO-AAPair, and SNOSite software.</p