Distribution of peaks in gene features.

Abstract

<p>A: On the basis of the <i>Drosophila melanogaster</i> gene annotation (Flybase.r5.38), we aligned the approximately 6,000 peaks of DsxF against the gene features. The majority of the peaks fall into less than one Kb promoters and intron regions, accounting for 61% together; followed by distal intergenic regions (9.7%) and 5′ UTR regions (5.1%). B: In order to identify the sequence motif of DSX binding sites, we performed a <i>de novo</i> search using the MEME algorithm (<a href="http://meme.nbcr.net/meme/" target="_blank">http://meme.nbcr.net/meme/</a>), based on the middle 200-bp DNA sequences of the reproducible peaks.</p

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