Multiple sequence alignment and phylogenetic analysis of <i>BnPRP1</i>.
- Publication date
- Publisher
Abstract
<p>(A) Unrooted Phylogenetic tree of BnPRP1 and its homologous proteins. Dendrogram obtained using neighbor-joining analysis based on the proportion (p-distance) of aligned amino acid sites of the full-length peptide sequences. BnPRP1 is marked with a solid triangle. Numbers at the base of each clade correspond to the bootstrap means of 1000 replications. Organism’s common or taxonomic names are shown in parenthesis. The Genbank accession numbers/Database accession numbers for the proteins/peptides are as follows: <i>Arabidopsis thaliana</i> (NP_197850.2); <i>Capsella rubella</i> (XP_006289819); <i>Camelina sativa</i> (XP_010421292.1); <i>Arabidopsis lyrata</i> (XP_00287212); <i>Eutrema salsugineum</i> (XP_0063947); <i>Brassica napus</i> (<i>Brassica napus</i> Database accession No. GSBRNA2T00120298001); <i>Brassica oleracea</i> (bolbase accession No: Bol016440); <i>Brassica rapa</i> (brad accession No: XP_009130006.1); <i>Brassica napus</i> (<i>Brassica napus</i> Database accession No:GSBRNA2T00147553001); <i>Brassica rapa</i> (brad accession No: XP_009150986.1); <i>Brassica napus</i> (GSBRNA2T00133542001); <i>Brassica oleracea</i> (bolbase accession No: Bol022411); <i>Brassica napus</i> (<i>Brassica napus</i> Database accession No: GSBRNA2T00120360001); SP-B (APD accession No: AP00889); BacFL31(APD accession No: AP02346); bumblebee_Abaecins (APD accession No: AP01215); honeybee_Abaecins (APD accession No: AP00002). (B) Multiple alignments of BnPRP1 and its homologs. Multiple alignments of BnPRP1 and its homologs identical amino acid residues were black-shaded, PPT motif of BnPRP1 is shown in box.</p