Additional file 1: Table S1. of Molecular dynamics simulation and bioinformatics study on chloroplast stromal ridge complex from rice (Oryza sativa L.)
Identification of the PsaC and PsaD proteins from the NCBI database in this study. Sequence identity to OsPsaC and OsPsaD were listed. Table S2. Identification of the psaC and psaD genes from the NCBI database in this study. Sequence identity to OspsaC and OspsaD were listed. Figure S1. Phylogenetic tree of the PsaC proteins. The numbers associated with the branches are bootstrap values. Species names are color-coded as follows: green → land plants, light green → charophyte, blue → pteridophyta, light blue → bryophyta, purple → green algae, and black → cyanobacteria. The tree was deposited in TreeBASE under submission ID 18661. Figure S2. Phylogenetic tree of PsaD proteins. The numbers associated with the branches are bootstrap values. Species names are color-coded as follows: green → land plants, light green → bryophyta, black → phaeocystis, and blue → green algae. The tree was deposited in TreeBASE under submission ID 18661. Figure S3. Sequences alignments of the psaC genes. The sequences encoding R19 and D47 are highlighted. The color code indicates consistency between pairwise alignments (red: high, yellow: middle, blue: low). Figure S4. Sequences alignments of the psaD genes. The sequences encoding K62 and E103 are highlighted. The color code indicates consistency between pairwise alignments (red: high, yellow: middle, blue: low). Figure S5. Two docking models are superimposed with the MD model. Two salt bridges R19-E103 and D47-K62 are highlighted in their vdW representations. (DOCX 1149 kb
