File contents: 1: Two BEAST input files for phylogenetic reconstructions; 2: input file, settings file and sample prob. file for BAMM analysis; 3: R script for downloading COI sequences from genbank; 4: R script for processing the 305 species tree (data extraction and pruning to genus tree); 5: R script for prepping 602 spp tree for BAMM and analyses of BAMM output files; 6: R scripts for SLOUCH analyse