Genotyping accuracy evaluation according to different sequencing depths.

Abstract

<p><b>A)</b> Distribution of coverage depths for all SNPs. <b>B)</b> Consistency of ddGBS genotyping results compared with 60K BeadArray microarrays using various filter conditions (sequencing depth ranging from 2× to 12×). <b>C)</b> Comparison of the missing rates of all 292 K SNPs on a per-site basis before and after depth filtering of 5×. <b>D)</b> Comparison of the missing rates of all 824 samples on a per-individual basis before and after depth filtering of 5×.</p