Implementation of
frequency-encoded multiplexing for ion mobility
spectrometry (e.g., Fourier transform ion mobility spectrometry (FT-IMS))
has facilitated the direct coupling of drift tube ion mobility instrumentation
with ion-trap mass analyzers despite their duty cycle mismatch. Traditionally,
FT-IMS experiments have been carried out to utilize continuous linear
frequency sweeps that are independent of the scan rate of the ion-trap
mass analyzer, thus creating a situation where multiple frequencies
are swept over two sequential mass scans. This in turn creates a degree
of ambiguity in which the ion current derived from a single modulation
frequency cannot be assigned to a single data point in the frequency-modulated
signal. In an effort to eliminate this ambiguity, this work describes
a discrete stepwise function to modulate the ion gates of the IMS
while synchronization between the generated frequencies and the scan
rate of the linear ion trap is achieved. While the number of individual
frequencies used in the stepped frequency sweeps is less than in continuous
linear modulation experiments, there is no loss in performance and
high levels of precision are maintained across differing combinations
of terminal frequencies and scan lengths. Furthermore, the frequency-scan
synchronization enables further data-processing techniques such as
linear averaging of the frequency modulated signal to drastically
improve signal-to-noise ratio for both high and low intensity analytes