Additional file 3 of Tumor-antigens and immune landscapes identification for prostate adenocarcinoma mRNA vaccine

Abstract

Additional file 3: Figure S3. Correlation of PRAD immune subtypes with existing biomarkers and homologous recombination deficiency score. Differential expression of HOXC6 (A), PDK4 (B), and STAT3 (C) across the PRAD immune subtypes. D. Copy number variation (CNV) counts across the PRAD immune subtypes. E. Mutation frequency of the top 20 mostly mutated genes in each PRAD immune subtype. F-H. Telomeric allelic imbalance score, large scale transition score, and loss of heterozygosity score for each PRAD immune subtype. * P < 0.01, ** P < 0.001, and *** P < 0.0001